View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_high_4 (Length: 424)
Name: NF6931_high_4
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 41471420 - 41471023
Alignment:
| Q |
18 |
accaaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagta |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41471420 |
accaaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagta |
41471321 |
T |
|
| Q |
118 |
tgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctgattctaccaaattttcaactaaaatgttaaacattatg |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41471320 |
tgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctgattctaccaaattttcaactaaaatgttaaacattatg |
41471221 |
T |
|
| Q |
218 |
aattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccgcatgattcacataataggatgataggttgaaaaa |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41471220 |
aattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccacatgattcacataataggatgataggttgaaaaa |
41471121 |
T |
|
| Q |
318 |
ttgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggccgttaatgtttgcaaaacaggacacttttctattagtattat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41471120 |
ttgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggccgttaatgtttgcaaaacaggacacttttctattagtattat |
41471023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 41478308 - 41477911
Alignment:
| Q |
18 |
accaaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41478308 |
accaaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagta |
41478209 |
T |
|
| Q |
118 |
tgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctgattctaccaaattttcaactaaaatgttaaacattatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41478208 |
tgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacctgattctaccaaattttcaactaaaatgttaaacattatg |
41478109 |
T |
|
| Q |
218 |
aattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccgcatgattcacataataggatgataggttgaaaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41478108 |
aattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccacatgattcacataataggatgataggttgaaaaa |
41478009 |
T |
|
| Q |
318 |
ttgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggccgttaatgtttgcaaaacaggacacttttctattagtattat |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41478008 |
ttgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggccgttaatgtttgcaaaacaggacacttttctattagtattat |
41477911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 40752636 - 40752280
Alignment:
| Q |
20 |
caaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagtatg |
119 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||| |
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| T |
40752636 |
caaataatgaaatcatggcaacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttaggcatcagataccttatgattaaaccagtatg |
40752537 |
T |
|
| Q |
120 |
aaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacct-----gattctaccaaattttcaactaaaatgttaaacatt |
214 |
Q |
| |
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||||||||||||||||||| ||| |||||||||||||||| | | ||||||||||||| || |||||| |||||||| ||||||||| |||| | |
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| T |
40752536 |
aaacaatatgacaaattaactaaaaatgtaaaaagaaaatatgctcttttcatagacctgacccgactctacc-aattttcacctaaaatgtaaaac--t |
40752440 |
T |
|
| Q |
215 |
atgaattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccgcatgattcacataataggatgataggttgaa |
314 |
Q |
| |
|
||| |||| |||||||| ||||||||||| ||||| ||||||| || ||||||||||||||||||||| | |||||||||| | |||||||| ||||| |
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| T |
40752439 |
atgtattacaatcatcaactttggacacaaacaactggatagctaatagacagttgaaacaagcaaccacgtgattcacatgaaaggatgatgcgttgag |
40752340 |
T |
|
| Q |
315 |
aaattgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggcc |
374 |
Q |
| |
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||||||||||||||| |||||||||||| || | ||||||||| || ||||| ||||||| |
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| T |
40752339 |
aaattgtaattccttagatatagaaactgggatgaaaacaccgaatgttttgcattggcc |
40752280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 41485513 - 41485189
Alignment:
| Q |
20 |
caaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagtatg |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||||| ||||||| |||| ||||||||| ||||||| |
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|
| T |
41485513 |
caaacaatgaaatcatggcaacaaagcaacaggaacaaactacttgaacttattttgcttcaagtttaggcatcagataccttatgattgaatcagtatg |
41485414 |
T |
|
| Q |
120 |
aaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatagacct-----gattctaccaaattttcaactaaaatgttaaacatt |
214 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| | ||||||||||||| ||| ||||| ||||||| ||||||||| |||| || |
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|
| T |
41485413 |
aaacaatatgacaaattaact--gaatgtaaaaagaaaatctgctcttttcatagacctgacccgatcctacc-aattttctcctaaaatgtaaaacttt |
41485317 |
T |
|
| Q |
215 |
atgaattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaacaagcaaccgcatgattcacataataggatgataggttgaa |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||| || |||||||| | |||||||||| | |||||||| ||| ||||||| ||||| |
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|
| T |
41485316 |
atgaattaaaatcatcatctttggacacaaacaactggatagctaatagacagtttagacaagcaaccaagttattcacatcataagatgatacgttgat |
41485217 |
T |
|
| Q |
315 |
aaattgtaattccttggatatagaaact |
342 |
Q |
| |
|
||| || ||||||||||||||||||||| |
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|
| T |
41485216 |
aaagtgaaattccttggatatagaaact |
41485189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 275
Target Start/End: Complemental strand, 40749607 - 40749435
Alignment:
| Q |
107 |
ttgaaccagtatgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcataga-----cctgattctaccaaattttcaactaa |
201 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| || ||||||| |||||||| | || ||||| |||| |||||||||| | |||| || |||| |
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|
| T |
40749607 |
ttgaaccagtgtgaaacaatatgaaaaattaacaaaaaatgtaagaagaaaatatattcttttcgtagacctcgcctgattctatc-gatttgcacctaa |
40749509 |
T |
|
| Q |
202 |
aatgttaaacattatgaattaaaatcatcacctttggacacagacaacgggatagcaaacagacagttgaaaca |
275 |
Q |
| |
|
|||| ||| |||||| |||||||| ||| ||||||||||| ||||| |||||||||| || |||||||||| |
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|
| T |
40749508 |
aatgcgaaatattatgcattaaaatgatcgtctttggacacaaacaactggatagcaaatggagagttgaaaca |
40749435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 40748892 - 40748826
Alignment:
| Q |
176 |
cctgattctaccaaattttcaactaaaatgttaaacattatgaattaaaatcatcacctttggacaca |
243 |
Q |
| |
|
|||||||||||||| |||| | |||||||| |||||||||||||||||||||| | ||||||||||| |
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| T |
40748892 |
cctgattctaccaa-ttttgacataaaatgtaaaacattatgaattaaaatcataatctttggacaca |
40748826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 16412600 - 16412778
Alignment:
| Q |
18 |
accaaacaatgaaatcatggccacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagta |
117 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||| |
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| T |
16412600 |
accaaacaattaaatcatggaagcaaagcaacagtaacaaactaccagaacttattttgcttgaagtttgggcatcaaa-accctatgattgaaccag-- |
16412696 |
T |
|
| Q |
118 |
tgaaacaatatgacaaattaattaataatgtaaaaagaaaatcttttgttttcatag-----acctgattctaccaaattttcaactaaaa |
203 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
16412697 |
--------tatgacaaattaactaataatgtaaaaagaaaagcttttgttttcatagacctaacctgattctaccaaa-tttcaactaaaa |
16412778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 16412791 - 16412882
Alignment:
| Q |
286 |
tgattcacataataggatgataggttgaaaaattgtaattccttggatatagaaactagggttaaaacaccgtatattttgaattggccgtt |
377 |
Q |
| |
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|||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
16412791 |
tgattcacataataagatgatacgttgagaaattgtaattccttggatatagaaacaagggttagaacaccgtacattttgaattggccgtt |
16412882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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