View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_high_8 (Length: 267)
Name: NF6931_high_8
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 41477804 - 41477606
Alignment:
| Q |
1 |
ttatgcaagacattttaaagttccttttcagaccattagatgagttgacatccaaaagacatcaatattaacatcagaatattgacatttatatgctgag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41477804 |
ttatgcaagacattttaaagttcattttcagaccattagattagttgatagccaaaagacattaatattaacatcagaatattgacatttatatgctgag |
41477705 |
T |
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| Q |
101 |
aaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtgtttgttgaagatcttccacgcc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41477704 |
aaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttgaagatcttccacgcc |
41477606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 41470916 - 41470732
Alignment:
| Q |
1 |
ttatgcaagacattttaaagttccttttcagaccattagatgagttgacatccaaaagacatcaatattaacatcagaatattgacatttatatgctgag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41470916 |
ttatgcaagacattttaaagttcattttcagaccattagattagttgatagccaaaagacattaatattaacatcagaatattgacatttatatgctgag |
41470817 |
T |
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| Q |
101 |
aaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtgtttgttga |
185 |
Q |
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| T |
41470816 |
aaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgcttgttga |
41470732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 40752055 - 40751863
Alignment:
| Q |
7 |
aagacattttaaagttccttttcagaccattagatgagttgacatccaaaagacatc--aatattaacatcagaatattgacatttatatgctgagaaag |
104 |
Q |
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| T |
40752055 |
aagacattttgaagttgattttcagagtattagatgagtttttagccaaaagacatactaacattaacattacaatattaatatttatatgccgaggaag |
40751956 |
T |
|
| Q |
105 |
atacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtgtttgttgaagatcttccacg |
197 |
Q |
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|||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40751955 |
atacatacacttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtgtttgttgaagatcttccacg |
40751863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 41484733 - 41484615
Alignment:
| Q |
78 |
aatattgacatttatatgctgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtg |
177 |
Q |
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|||||| |||||||||||||||| |||||||||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||| || |||| |
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| T |
41484733 |
aatattaacatttatatgctgaggaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagtg |
41484634 |
T |
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| Q |
178 |
tttgttgaagatcttccac |
196 |
Q |
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| T |
41484633 |
tttgttgaagatcttccac |
41484615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 41484932 - 41484865
Alignment:
| Q |
7 |
aagacattttaaagttccttttcagaccattagatgagttgacatccaaaagacatcaatattaacat |
74 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
41484932 |
aagacattttaaagttgattttcagaccattagatgagttgatggccaaaagacattaatattaacat |
41484865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 30774031 - 30774068
Alignment:
| Q |
78 |
aatattgacatttatatgctgagaaagatacatacact |
115 |
Q |
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|||||| |||||||||| |||||||||||||||||||| |
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| T |
30774031 |
aatattaacatttatattctgagaaagatacatacact |
30774068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 30773973 - 30774041
Alignment:
| Q |
7 |
aagacattttaaagttccttttcagaccattagatgagttgacatccaaaag-acatcaatattaacat |
74 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||| |||| | ||||||| | || ||||||||||| |
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| T |
30773973 |
aagacattttaaagttgattttcagatcattagatgatttgatagccaaaagcatattaatattaacat |
30774041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 16408003 - 16408102
Alignment:
| Q |
97 |
tgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtgtttgttgaagatcttccac |
196 |
Q |
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||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
16408003 |
tgagataggtacatacacttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttgaagatcttccac |
16408102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 52481361 - 52481251
Alignment:
| Q |
85 |
acatttatatgctgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcctgaacaaccagtgtttgttg |
184 |
Q |
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||||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
52481361 |
acatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttg |
52481262 |
T |
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| Q |
185 |
aagatcttcca |
195 |
Q |
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|||||| |||| |
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| T |
52481261 |
aagatcatcca |
52481251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 6146460 - 6146420
Alignment:
| Q |
78 |
aatattgacatttatatgctgagaaagatacatacacttat |
118 |
Q |
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|||||| |||||||||| ||||||||||||||||||||||| |
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| T |
6146460 |
aatattaacatttatattctgagaaagatacatacacttat |
6146420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 6146518 - 6146450
Alignment:
| Q |
7 |
aagacattttaaagttccttttcagaccattagatgagttgacatccaaaag-acatcaatattaacat |
74 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| |||| | ||||||| | || ||||||||||| |
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| T |
6146518 |
aagacattttaaagttgattttcagatcattagatgatttgatagccaaaagcatattaatattaacat |
6146450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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