View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6931_low_2 (Length: 652)

Name: NF6931_low_2
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6931_low_2
NF6931_low_2
[»] chr2 (1 HSPs)
chr2 (18-644)||(38321822-38322443)


Alignment Details
Target: chr2 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Original strand, 38321822 - 38322443
Alignment:
Q  18 cagttctgtgaatttatcctaactcaactctcctatatccgaaggcacaagtaaagattgcttcctacctatctaatctatgg-catgtttggaacaacg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |    
T  38321822 cagttctgtgaatttatcctaactcaactctcctatatccgaaggcacaagtaaagattgcttcctacctatctaatctatcgacatgtttggaacaatg 38321921  T
Q  117 atgagtttgacacagtagcaccatgattttgttaaagccctaaacta-----tagtttttgtgtcaaactcaccgtcaatccaaacatgaactatatctt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38321922 atgagtttgacacagtagcaccatgattttgttaaagccctaaactaaagtatagtttttgtgtcaaactcaccgtcgatccaaacatgaactatatctt 38322021  T
Q  212 attctaaattaaatacatcttttaaacttctcaccctcgccaaaatttctgatgtttcaaaactttccataaatcagggactgtccaaatgatataaaag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  38322022 attctaaattaaatacatcttttaaacttctcaccctcgccaaaatttctgttggttcaaaactttccataaatcagggactgtccaaatgatataaaag 38322121  T
Q  312 aagcaatttctagtcttatatttgcatctgcaaggtgtggggatattcccgagctctttgtaatcaggatactgtttggaaaacgttatggtgagcaatt 411  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322122 aagcaatttctagtcttatatttgcatctgcaagatgtggggatattcccgagctctttgtaatcaggatactgtttggaaaacgttatggtgagcaatt 38322221  T
Q  412 tgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacatttttattcgtttcagtgaagggctatgtagtaccaacagttttga 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  38322222 tgcaactacagctgtggagctatttccggggaatctcgttaacaaacaggtacatttttgttcgtttcagtgaagggctatgtagcaccgacagttttga 38322321  T
Q  512 tccaaaacgtgccctatatttgacatatgtcagtgtctgacaccgacacaatcctgacttatgcggttatatttaatcacttttactttcttaaactatt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |||||||| ||||||||||||||||||||||||||||||||||||    
T  38322322 tccaaaacgtgccctatatttgacatatgtcagtgtctgacacc-----------gacttatgtggttatatttaatcacttttactttcttaaactatt 38322410  T
Q  612 acaaatgttaatgtccgtgtttgcgtctctgct 644  Q
    |||||||||||||||||||||||||||| ||||    
T  38322411 acaaatgttaatgtccgtgtttgcgtctgtgct 38322443  T

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