View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_low_3 (Length: 519)
Name: NF6931_low_3
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 408
Target Start/End: Original strand, 27523837 - 27524216
Alignment:
| Q |
10 |
gtgagaagaacttggtgatgacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaaattatttcatattcatttt |
109 |
Q |
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| T |
27523837 |
gtgaaaagaacttggtgataacaacttataatttgtaggcataaaaataatgaatttcaattgcaaatgttggtaaataaa---------tattcatttt |
27523927 |
T |
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| Q |
110 |
agagacnnnnnnnnnnnnnnnnaaagctattttctccattattcgtataatactataatattcttatatttgaacgagtcattaactaactctatgtcct |
209 |
Q |
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| T |
27523928 |
agagactttttttcaattttttaaagctattttctccattattcgtataata--------ttcttatatttgaacgagtcattaactaactctatgtcct |
27524019 |
T |
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| Q |
210 |
cgtctattaacggtaactctacttgcctttggtaataaatgcatgctgcattttttcttcaacaaccaaaccaaactgtgttatagcctttcagtcaata |
309 |
Q |
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| T |
27524020 |
cgtctattaacggtaact--acttgcctttggtaataaatgcatgctgcattttttcttcaacaaccaaaccaaactgtgttatagcctttcagtcaata |
27524117 |
T |
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| Q |
310 |
gacttgtagttgatggtgcaggaagcttggaaaataaacacatggtgaaggtttcacaaaataggagtaatgagagattgtgagtgtttgtaaatacat |
408 |
Q |
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| T |
27524118 |
gacttgtagttgatggtgcaggaagcttggaaaataaacaaatggtgaaggtttcacactataggagtaatgagagattgtgagtgtttgtaaatacat |
27524216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 434 - 501
Target Start/End: Original strand, 27524239 - 27524307
Alignment:
| Q |
434 |
attaaaaagat-tgcagttgtttggagaataggcataattgactgaacttcattaacaatgttatgtat |
501 |
Q |
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| T |
27524239 |
attaaaaagatgtgcagttgtttggagaataggcataactgaccgaacttcgttaacaatgctatgtat |
27524307 |
T |
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