View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_low_5 (Length: 405)
Name: NF6931_low_5
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 52340432 - 52340051
Alignment:
| Q |
8 |
ttggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatgga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340432 |
ttggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatgga |
52340333 |
T |
|
| Q |
108 |
cattgttacaggtagatacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52340332 |
cattgttacaggtagatacctctctcattgtcatgggcaattttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaa |
52340233 |
T |
|
| Q |
208 |
ctataaaatattgatgataataatttcccacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagca |
307 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52340232 |
ctataaaatattgataataataatttcctacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatgaatatgatactagca |
52340133 |
T |
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| Q |
308 |
tgcacactataattcaatcaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacact |
389 |
Q |
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| T |
52340132 |
tgcacactataattcaattaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacact |
52340051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 52334429 - 52334316
Alignment:
| Q |
8 |
ttggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatgga |
107 |
Q |
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|||||||||||||||| || |||||| ||||||||||||| | ||||||||||| | | || |||| | ||||| || ||||||||||||||| || |
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| T |
52334429 |
ttggtgtttatttgcaggatatcgctgttccatatcttgcagagaaatggaaggccagatctgctcatgaattaacggataccgttcccttcttcagaga |
52334330 |
T |
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| Q |
108 |
cattgttacaggta |
121 |
Q |
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||| |||||||||| |
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| T |
52334329 |
catcgttacaggta |
52334316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 9184625 - 9184243
Alignment:
| Q |
8 |
ttggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatgga |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9184625 |
ttggtgtttatttgcaggacatcgctattccatatcttgccgcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcttgga |
9184526 |
T |
|
| Q |
108 |
cattgttacaggtagatacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaa |
207 |
Q |
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||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184525 |
cattgttacaggtggatacctctctaattgtcatgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaa |
9184426 |
T |
|
| Q |
208 |
ctataaaatattgatgataataatttcccacatagtagacttataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagca |
307 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9184425 |
ctataaaatattgataataataatttcccacatagtagactgataatcattccagaaacaatgattaaattcattaaaatgcatggatatgatactagca |
9184326 |
T |
|
| Q |
308 |
tgcacactataattcaa-tcaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacact |
389 |
Q |
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| T |
9184325 |
tgcacactataattcaatttaggtctcaccatttatcttagatgacaatatgtttggaaatagtgtattatgaaagtgacact |
9184243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 9181030 - 9180917
Alignment:
| Q |
8 |
ttggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatgga |
107 |
Q |
| |
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|||||||||||||||| || |||||| ||||||||||||| | ||||||||||| ||| || |||| | ||||| || ||||||||||||||| || |
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| T |
9181030 |
ttggtgtttatttgcaggatatcgctgttccatatcttgcagagaaatggaaggccaaatctgctcatgaattaacggataccgttcccttcttcagaga |
9180931 |
T |
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| Q |
108 |
cattgttacaggta |
121 |
Q |
| |
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||| |||||||||| |
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| T |
9180930 |
catcgttacaggta |
9180917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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