View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_low_7 (Length: 324)
Name: NF6931_low_7
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 40334692 - 40334875
Alignment:
| Q |
17 |
tcagagagaatatattgacccttaatgtttaataatccacctctggttttacagttctagttaaacattgctgatttatttaagtaagtttagacaaaac |
116 |
Q |
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| T |
40334692 |
tcagagagaatatattgacccttaatgtttaataatccacctctggttttacagttctagttaaacattgctgatttatttaagtaagtttagacaaaac |
40334791 |
T |
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| Q |
117 |
aaacgatatttctattccaaagaaattatcagctttacatacactccatttacataaaattccaagtccttagagtatatatac |
200 |
Q |
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| T |
40334792 |
aaacaatatttctattccaaagaaattatcagctttacatacactccatttacataaaattccaagtccatagagtatatatac |
40334875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 40334902 - 40335004
Alignment:
| Q |
211 |
tcaagtttacttgcttttatgacacttaagtaatgcctgtagcagacatgacatgaatctcttagggtgtcataagcatgctcctgagctcatgtttgtt |
310 |
Q |
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| T |
40334902 |
tcaagtttacttgcttttatgacacttaagtaatgcctgtagcagacatgacatgaatctcttagggtgtcataagcatgctcctgagctcatgtttgtt |
40335001 |
T |
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| Q |
311 |
ctt |
313 |
Q |
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||| |
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| T |
40335002 |
ctt |
40335004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 305
Target Start/End: Original strand, 40305908 - 40305942
Alignment:
| Q |
271 |
cttagggtgtcataagcatgctcctgagctcatgt |
305 |
Q |
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| T |
40305908 |
cttagggtgtcataagcatactcctgagctcatgt |
40305942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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