View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6931_low_9 (Length: 244)
Name: NF6931_low_9
Description: NF6931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6931_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27523902 - 27523665
Alignment:
| Q |
1 |
ttgcaattcaaattcagtatttttatgcctacaaataataagttgtcatcaccaagttcttttcaccatgacaggaggtagaaataatagagaaatagag |
100 |
Q |
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| T |
27523902 |
ttgcaattgaaattcattatttttatgcctacaaattataagttgttatcaccaagttcttttcaccatgacaggaggtagaaataatagagaaatagag |
27523803 |
T |
|
| Q |
101 |
attctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaatgaattaaggaataacatcccgta |
200 |
Q |
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| T |
27523802 |
attctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaaagaattaaggaataacatcccgta |
27523703 |
T |
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| Q |
201 |
aaaaagaaggaaattagcaatccaaacaagaataatct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27523702 |
aaaaagaaggaaattagcaatccaaacaagaataatct |
27523665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 99 - 229
Target Start/End: Complemental strand, 12858395 - 12858268
Alignment:
| Q |
99 |
agattctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaatgaattaaggaataacatcccg |
198 |
Q |
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||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
12858395 |
agattctgaacaatccaaatgtcgcaattaggaggccacaat-gatggtagaattttcaacataaacaaatatttgaaagaattaagaaataacatcc-- |
12858299 |
T |
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| Q |
199 |
taaaaaagaaggaaattagcaatccaaacaa |
229 |
Q |
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| T |
12858298 |
tataaaagatggaaattagcaattcaaacaa |
12858268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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