View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_high_7 (Length: 289)
Name: NF6932_high_7
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 943895 - 944151
Alignment:
| Q |
16 |
tcaattttagcatcagagagggacttctccaacacagtattattctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagagttg |
115 |
Q |
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| T |
943895 |
tcaattttagcatcagagagggacttctccagcacagtattattctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagggttg |
943994 |
T |
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| Q |
116 |
atttctcatcagcaagaatggatttttcttcttggagaacatggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattcag |
215 |
Q |
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| T |
943995 |
atttctcatcagcaagaatggatttttcttcttggagaacttggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattcag |
944094 |
T |
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| Q |
216 |
tcctaacagagaaaattccatacaggcattttccatcaaaacttcattcatgtcttt |
272 |
Q |
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| T |
944095 |
tcctaacagagaaaattccatacaggcattttccatcaaaacttcattcatgtcttt |
944151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 46661322 - 46661478
Alignment:
| Q |
58 |
ttctccaatatcttctgcatactttcagtgataatttgcagctgtgaaagaagagttgatttctcatcagcaagaatggatttttcttcttggagaacat |
157 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||| || || | | || |||||||||| || ||||| ||||||||||||| | ||||||| |
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| T |
46661322 |
ttctccaataacttctgcatactttcggtgataatttgcaattgcgacaataaagctgatttctcaccaacaagagtggatttttcttccttcagaacat |
46661421 |
T |
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| Q |
158 |
ggcagaactgttgaatttccttcactgttcctctcaatccatctaactcatcattca |
214 |
Q |
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| T |
46661422 |
ggcatgactcttgaaatttcttcattgtatctcttactccatctagctcatcattca |
46661478 |
T |
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