View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_1 (Length: 647)
Name: NF6932_low_1
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 40660809 - 40660469
Alignment:
| Q |
15 |
acatcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
113 |
Q |
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| T |
40660809 |
acatcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
40660710 |
T |
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| Q |
114 |
ctactacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
213 |
Q |
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| T |
40660709 |
ctactacctccggttttttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
40660610 |
T |
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| Q |
214 |
gtctacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtt |
313 |
Q |
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| T |
40660609 |
gtccacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtt |
40660510 |
T |
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| Q |
314 |
tggtttggtttggtgctgtctaagtggaaacagcaccttggcacag |
359 |
Q |
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| T |
40660509 |
tggtt-----tggtgctgtctaagtggaaacagcaccttggcacag |
40660469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 456 - 624
Target Start/End: Complemental strand, 4264443 - 4264275
Alignment:
| Q |
456 |
ttttggagggattagtttttgcttcggtacaaaaatttaagaaacacatcggagggtggtggttactctgccctgctccaaatgaacattctcatagtta |
555 |
Q |
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| T |
4264443 |
ttttggagggattagtttttgcttcggtacaaaaatttaagaaacacatcggagggtggtggttactctgccctgctccaaatgaacattctcatagtta |
4264344 |
T |
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| Q |
556 |
tctccgcttcaatctctctacttctagccatactcattgcttctctccatcttctccaccccacatgta |
624 |
Q |
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| T |
4264343 |
tctccgcttcaatctctctacttctagccatactcattgcttctctccatcttctccaccccacatgta |
4264275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 404 - 466
Target Start/End: Complemental strand, 4271414 - 4271352
Alignment:
| Q |
404 |
tagatacatttgccatatccctagaaatggggatgcagtagttaaatacagtttttggaggga |
466 |
Q |
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| T |
4271414 |
tagatacatttgccatatccctagaaatgggaatgcagcagttaaatacagtttttggaggga |
4271352 |
T |
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