View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_10 (Length: 320)
Name: NF6932_low_10
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 2615539 - 2615844
Alignment:
| Q |
15 |
gctctggtacatgttgttggggagtccagaggcgatgagaacaagtacgagtcaaatgctctggtaccacaagagagtaagacactatctccatccaaaa |
114 |
Q |
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| T |
2615539 |
gctctggtacatgttgttggggagtccagaggcgacgagaacaactacgagtcaaatgctctagtaccacaagagagtaagacactatctccatacaaaa |
2615638 |
T |
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| Q |
115 |
ccttaaggtattaggaatatgagacacatctcttataaattttatattttactcattcataagcgatttgagacttaaccacactcggacttaaaaccca |
214 |
Q |
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| T |
2615639 |
ccttaaggtattaggaatatgagacacatctcttataaatcttatattttactcattcataggcgatttgagacttaaccacactcgaacttgaaaccta |
2615738 |
T |
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| Q |
215 |
acaatctctcccataagtgtgagtctatctcctataagatgtttcaacacaggattcattccctcttacccaacaagccaagtcagggctctcatacccc |
314 |
Q |
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| T |
2615739 |
acaatctctcccataagtgtgagtctatctcctataacatgtttcaacacaggattcattccctcttacccaacaagccaaatcagggctctcatacccc |
2615838 |
T |
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| Q |
315 |
ttgaga |
320 |
Q |
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|||||| |
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| T |
2615839 |
ttgaga |
2615844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 11200028 - 11199913
Alignment:
| Q |
101 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttataaattttatattttactcattcataagcgatttgagacttaaccacactc |
200 |
Q |
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| T |
11200028 |
atctccacccaaaaccttaaggcattaggcatatgagtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaac--cactc |
11199931 |
T |
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| Q |
201 |
ggacttaaaacccaacaa |
218 |
Q |
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| T |
11199930 |
acacttaaaacccaacaa |
11199913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 50391944 - 50391994
Alignment:
| Q |
101 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttata |
151 |
Q |
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| T |
50391944 |
atctccatccaaaaccttaagacattaggtatatgagtcacatatcttata |
50391994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 28296080 - 28296154
Alignment:
| Q |
101 |
atctccatccaaaaccttaaggtattaggaatatgagacacatctcttataaattttatattttactcattcata |
175 |
Q |
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| T |
28296080 |
atctccacccaaaaccttaagagattaggtatatgggtcacctctcttatacattcaatattttactcattcata |
28296154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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