View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_12 (Length: 304)
Name: NF6932_low_12
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 34324893 - 34324605
Alignment:
| Q |
1 |
tcaaagtgctccaataaggtgacacagactccataggactgggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatc |
100 |
Q |
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| T |
34324893 |
tcaaagtgctccaataaggtgacacagactccataggactgggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatc |
34324794 |
T |
|
| Q |
101 |
tgcattggaaaggcaaagggttccgttattagtgctagaacccctaatataaaagatagggtactcctcctgttgaagtggagttggcaagtccaattta |
200 |
Q |
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| T |
34324793 |
tgcattggaaagacaaagggttccgttattagtgctagaacccctaatataaaagatagcg---tcctcttgttgaagtggagttggcaagtccaattta |
34324697 |
T |
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| Q |
201 |
agtctattctcaaagctctgactagacagtaaatgcaaaaaggacacggtcctgccactgttatagacaacttggtgtaggatgagtgatgt |
292 |
Q |
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| T |
34324696 |
agtctattctcaaagctctgactagacagtaaatgcaaaaaggacacggtccagccactgttatagacaacctggtgtaggataagtgatgt |
34324605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 29352965 - 29353206
Alignment:
| Q |
1 |
tcaaagtgctccaataaggtgacacagactccataggactgggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||| ||||||||||| |||| | || |
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| T |
29352965 |
tcaaagagctccaataaggtgacacagactccattggactgggaggaatgacattgacttcatctattgttggattctacaatacaagtttactatgatt |
29353064 |
T |
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| Q |
101 |
tgcattggaaaggcaaagggttccgttattagtgctagaacccctaatataaaagatagggtactcctcctgttgaagtggagttggcaagtccaattta |
200 |
Q |
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| T |
29353065 |
tccattggaaaggcaaagggttccgttattagtgctagaaccccaaatataaaggacaggg---tcctcctgttgaagtggagttggcaagtccaatttg |
29353161 |
T |
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| Q |
201 |
agtctattctcaaagctctgactagacagtaaatgcaaaaaggac |
245 |
Q |
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| T |
29353162 |
agtctattctcaaagctccgactagacagtaagtgcaaataggac |
29353206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4027469 - 4027178
Alignment:
| Q |
1 |
tcaaagtgctccaataaggtgacacagactccataggactgggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027469 |
tcaaagtgctccaataaggtgacacagactccataggactggaaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatc |
4027370 |
T |
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| Q |
101 |
tgcattggaaaggcaaagggttccgttattagtgctagaacccctaatataaaagatagggtactcctcctgttgaagtggagttggcaagtccaattta |
200 |
Q |
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| T |
4027369 |
tgcattggaaaggcaaagggttccgttattagtgctagaacccctaatataaaagataggg---tcctcctgttgaagtggagttggcaagtccaattta |
4027273 |
T |
|
| Q |
201 |
agtctattctcaaagctctgactagacagtaaatgcaaaaaggacacggtcctgccac---tgttatagacaacttggtgtaggatgagtgatgt |
292 |
Q |
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| T |
4027272 |
agtctattctcaaagctctgactagacagtaaatgcaaataggagacggtcctgcgacttttattatagacaacctgatgtaggatgagtgatgt |
4027178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 30249418 - 30249149
Alignment:
| Q |
17 |
aggtgacacagactccataggactgggaggaatgacaacgatttcatctgttgttggattccacaatacaagtgtactgtcatctgcattggaaaggcaa |
116 |
Q |
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|||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | || || |||||||||||| |
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| T |
30249418 |
aggtgacacagaatccctaggactgggaggaatgacattgacttcatctgttgttggattccacaatacaaatgttttatcgcct---ttggaaaggcaa |
30249322 |
T |
|
| Q |
117 |
agggttccgttattagtgctagaacccctaatataaaagatagggtactcctcctgttgaagtggagttggcaagtccaatttaagtctattctcaaagc |
216 |
Q |
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|| ||||||||| ||||||||||| | ||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
30249321 |
agtgttccgttaatagtgctagaatacaaaatataaaacatagggtgctccgtttgt---agtggagttggcaagtccaattttagtctattctcaaagc |
30249225 |
T |
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| Q |
217 |
tctgactagacagtaaatgcaaaaaggacacggtcctgccactgttatagacaacttggtgtaggatgagtgatgt |
292 |
Q |
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|||||||||||||||||||||||| |||||| || |||| || |||| ||||| || |||| |||||||||||| |
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| T |
30249224 |
tctgactagacagtaaatgcaaaatggacacagtgctgcgacctttatggacaagctgttgtatgatgagtgatgt |
30249149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 25627597 - 25627527
Alignment:
| Q |
165 |
tcctcctgttgaagtggagttggcaagtccaatttaagtctattctcaaagctctgactagacagtaaatg |
235 |
Q |
| |
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||||||| ||||| |||| ||||||||| ||||| |||||||||||||| |||| |||||| ||| |||| |
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| T |
25627597 |
tcctcctcttgaaatggatttggcaagtggaatttgagtctattctcaaacctcttactagatagtgaatg |
25627527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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