View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_16 (Length: 257)
Name: NF6932_low_16
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 9005020 - 9004785
Alignment:
| Q |
10 |
cacagggcccgatgtctcatttgctgtcaacaaactctctcaattcatgcataaacctaccaccctccacttccagcaccttaaaaggttacttaggtac |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9005020 |
cacacggcccgatgtctcatttgctgtcaacaaactctctcaattcatgcacaaacctaccaccctccacttccagcaccttaaaaggttacttagttac |
9004921 |
T |
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| Q |
110 |
ctcaaatcgaccattaactttggtatcatgcttaggaaaccaaactcctttcaacttctcgcctacactgatgctgattggggtggcaatcccgatgatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9004920 |
ctcaaatcgaccattaactttggtatcatgcttaggaaaccaaactcctttcaacttctcgcctacactgatgctgattggggtggcaatcccgatgatc |
9004821 |
T |
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| Q |
210 |
gcacatccacttcagcgtatcttatattttttggtg |
245 |
Q |
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| T |
9004820 |
gcacatccacttcagcgtatcttatattttttggtg |
9004785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 2662398 - 2662431
Alignment:
| Q |
36 |
tcaacaaactctctcaattcatgcataaacctac |
69 |
Q |
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| T |
2662398 |
tcaacaaactctctcaattcatgcataagcctac |
2662431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 40113200 - 40113147
Alignment:
| Q |
15 |
ggcccgatgtctcatttgctgtcaacaaactctctcaattcatgcataaaccta |
68 |
Q |
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| T |
40113200 |
ggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaaccta |
40113147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 1109184 - 1109121
Alignment:
| Q |
182 |
gctgattggggtggcaatcccgatgatcgcacatccacttcagcgtatcttatattttttggtg |
245 |
Q |
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| T |
1109184 |
gctgattggggtggcaatcccgatgatcgcacatccacttcagcgtatcttatattttttggtg |
1109121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 28083546 - 28083480
Alignment:
| Q |
179 |
gatgctgattggggtggcaatcccgatgatcgcacatccacttcagcgtatcttatattttttggtg |
245 |
Q |
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| T |
28083546 |
gatgccgactggggtggcaatcatgatgatcgcacctccacatcagcatatattatattttttggtg |
28083480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 32074034 - 32074100
Alignment:
| Q |
179 |
gatgctgattggggtggcaatcccgatgatcgcacatccacttcagcgtatcttatattttttggtg |
245 |
Q |
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| T |
32074034 |
gatgccgactggggtggcaatcatgatgatcgcacctccacatcagcatatattatattttttggtg |
32074100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 69
Target Start/End: Original strand, 3019465 - 3019498
Alignment:
| Q |
36 |
tcaacaaactctctcaattcatgcataaacctac |
69 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
3019465 |
tcaacaaactctctcaattcatgcataagcctac |
3019498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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