View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_18 (Length: 252)
Name: NF6932_low_18
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9665471 - 9665234
Alignment:
| Q |
1 |
tgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacac |
100 |
Q |
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| T |
9665471 |
tgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacac |
9665372 |
T |
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| Q |
101 |
cagatgttgaaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggt |
200 |
Q |
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| T |
9665371 |
cagatgttgaaaaataaacattcagtccttgttcacacaattgaccaacaaaaataagattaagtgtcaagttaggaatgtaatatgtgtcaggcagggt |
9665272 |
T |
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| Q |
201 |
gagatttgaggtggatacatgaccggtataagtgatgt |
238 |
Q |
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| T |
9665271 |
gagatttgaggtggatacatgaccggtatgagtgatgt |
9665234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 11351045 - 11350953
Alignment:
| Q |
1 |
tgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacc |
93 |
Q |
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| T |
11351045 |
tgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccgtcccaatgatctgcttcgtctgtggatcctatacc |
11350953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 12617584 - 12617358
Alignment:
| Q |
10 |
ggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacaccagatgttg |
109 |
Q |
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| T |
12617584 |
ggaagatgaagagattgaagctcaaataatagacccaccctgcgacatgtcccaatgatatgtttcgtttgtagattaagtacatggacacctgaaggag |
12617485 |
T |
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| Q |
110 |
aaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggtgagatttga |
209 |
Q |
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|||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |||| ||| ||| || ||||| ||||| |
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| T |
12617484 |
aaaaataaacattttgtccttgttcacacaattggccaacagaaataagattaagtgtcaagttctgtatgcaatagatgtaaggaagagtgaggtttga |
12617385 |
T |
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| Q |
210 |
ggtggatacatgaccggtataagtgat |
236 |
Q |
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| T |
12617384 |
ggtggatacatgactagtatgagtgat |
12617358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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