View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6932_low_5 (Length: 437)

Name: NF6932_low_5
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6932_low_5
NF6932_low_5
[»] chr4 (9 HSPs)
chr4 (9-348)||(8254252-8254591)
chr4 (9-348)||(8267670-8268009)
chr4 (50-280)||(38929027-38929257)
chr4 (288-348)||(28966403-28966463)
chr4 (155-246)||(31051204-31051295)
chr4 (45-273)||(46699456-46699681)
chr4 (288-348)||(38929329-38929388)
chr4 (288-347)||(46699319-46699378)
chr4 (167-216)||(30963892-30963941)
[»] chr1 (9 HSPs)
chr1 (9-280)||(19597812-19598080)
chr1 (141-280)||(46693414-46693552)
chr1 (60-222)||(24450444-24450605)
chr1 (165-216)||(41919909-41919960)
chr1 (45-128)||(50590073-50590156)
chr1 (165-213)||(31586287-31586335)
chr1 (45-101)||(46693961-46694017)
chr1 (288-344)||(50589795-50589851)
chr1 (166-202)||(24685106-24685142)
[»] chr5 (4 HSPs)
chr5 (45-280)||(27712307-27712542)
chr5 (22-280)||(22687153-22687411)
chr5 (47-267)||(697615-697834)
chr5 (288-346)||(27712614-27712672)
[»] chr2 (4 HSPs)
chr2 (45-264)||(2062149-2062368)
chr2 (143-216)||(31902967-31903040)
chr2 (46-128)||(16959201-16959283)
chr2 (310-347)||(2062396-2062433)
[»] chr6 (2 HSPs)
chr6 (194-343)||(13099081-13099232)
chr6 (155-216)||(12793554-12793615)
[»] chr7 (6 HSPs)
chr7 (47-213)||(37792640-37792806)
chr7 (45-267)||(10243439-10243660)
chr7 (71-123)||(38165702-38165754)
chr7 (155-222)||(38484992-38485059)
chr7 (141-218)||(1320127-1320204)
chr7 (143-216)||(3420242-3420315)
[»] chr8 (4 HSPs)
chr8 (45-266)||(37987465-37987685)
chr8 (165-216)||(34866640-34866691)
chr8 (165-213)||(9519068-9519116)
chr8 (165-216)||(10551755-10551806)
[»] chr3 (4 HSPs)
chr3 (60-266)||(45163256-45163461)
chr3 (144-216)||(1653499-1653571)
chr3 (167-266)||(2394726-2394825)
chr3 (143-216)||(17501816-17501889)
[»] scaffold0499 (1 HSPs)
scaffold0499 (203-343)||(5971-6113)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 8254252 - 8254591
Alignment:
Q  9 cgtgttgacagtggtagtcatttatgtatcttcagacctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgt 108  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  8254252 cgtgttgacggtagtagtcatttatgtatcttcagatctttttgggtcgggttggtggtctcttgtagctttttggcttgattgttgtttactccagcgc 8254351  T
Q  109 cagacgccttctcctcgtcactaacgaatgcatgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttc 208  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||| | ||||| |||| ||||| |||||||||||||||||||||||||    
T  8254352 cagacgccttctcctcgtcactgacggatgtatgtttacgatctaggttgtgtctccacttcagaccgacgtcgatgcccgtgtcttgttgttgggtttc 8254451  T
Q  209 atcttccttttggtttgtgttcaggttgcttcctgtttcttggcgagggggtttggaggtgtagtctttgtcctactccccttggagactttcaacctca 308  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8254452 atcttccttttggtctgtgttcaggttgctgcctgtttcttggcgagggggtttggaggtgtagtctttgtcctactccccttggagactatcaacctca 8254551  T
Q  309 ttgtcttgctcttgtgcttgctgaaccttggtgttgcagg 348  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  8254552 ttgtcttgctcttgttcctgctgaaccttggtgttgcagg 8254591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 348
Target Start/End: Original strand, 8267670 - 8268009
Alignment:
Q  9 cgtgttgacagtggtagtcatttatgtatcttcagacctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgt 108  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  8267670 cgtgttgacggtagtagtcatttatgtatcttcagatctttttgggtcgggttggtggtctcttgtagctttttggcttgattgttgtttactccagcgc 8267769  T
Q  109 cagacgccttctcctcgtcactaacgaatgcatgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttc 208  Q
    |||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||| | ||||| |||| ||||| |||||||||||||||||||||||||    
T  8267770 cagacgccttctcctcgtcactgacggatgtatgtttacgatctaggttgtgtctccacttcagaccgacgtcgatgcccgtgtcttgttgttgggtttc 8267869  T
Q  209 atcttccttttggtttgtgttcaggttgcttcctgtttcttggcgagggggtttggaggtgtagtctttgtcctactccccttggagactttcaacctca 308  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8267870 atcttccttttggtctgtgttcaggttgctgcctgtttcttggcgagggggtttggaggtgtagtctttgtcctactccccttggagactatcaacctca 8267969  T
Q  309 ttgtcttgctcttgtgcttgctgaaccttggtgttgcagg 348  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  8267970 ttgtcttgctcttgttcctgctgaaccttggtgttgcagg 8268009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 280
Target Start/End: Original strand, 38929027 - 38929257
Alignment:
Q  50 ttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtttacga 149  Q
    |||||||| |||||||| | ||||| ||||||||||||| |||||||||||||||||| |||||| || ||||| |||||    | |  | ||||| |||    
T  38929027 ttgggtcgtgttggtggactcttgtcgctttttggcttggttgttgtttactccggcgccagacgtctcctccttgtcaccggtggaaacctgttttcga 38929126  T
Q  150 tctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgtttctt 249  Q
    |||| ||||||| | ||||||| |||||||||  ||||||||| |||||||| | | |||||||||||||| |||   ||  ||||| | ||||||||||    
T  38929127 tctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgttagttatcatcttccttttgatttagctttgggttgttgcctgtttctt 38929226  T
Q  250 ggcgagggggtttggaggtgtagtctttgtc 280  Q
    | ||||| | ||||   ||||||||||||||    
T  38929227 gacgaggtgatttgacagtgtagtctttgtc 38929257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 28966403 - 28966463
Alignment:
Q  288 ccttggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgttgcagg 348  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||    
T  28966403 ccttggagactttcaacctcgttgtcttgctcttgtgtctgctgaaccgtggtgttgcagg 28966463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 31051295 - 31051204
Alignment:
Q  155 gttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgttt 246  Q
    ||||||| | ||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||| | ||||||||   |||||| |||||||    
T  31051295 gttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcctttagatttgtgttggtgttgctacctgttt 31051204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 273
Target Start/End: Complemental strand, 46699681 - 46699456
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtt 144  Q
    ||||||||||| | |||||||| | ||||| ||||||||| ||| ||||| |||||| |||||   ||||||||||||| |||||||  |  ||| |  |    
T  46699681 cctttttgggttgtgttggtgggctcttgttgctttttggtttggttgttatttacttcggcgatggacgccttctccttgtcactagtgggtgcct--t 46699584  T
Q  145 tacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgt 244  Q
    ||||  |    ||| || | ||||||||| |||||||| ||||||||| ||||||||||  ||||||||||| ||| | ||||||  ||||| | |||||    
T  46699583 tacgtccgggtttgagtttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcctattgatctgtgtt-tggttgatgcctgt 46699485  T
Q  245 ttcttggcgagggggtttggaggtgtagt 273  Q
     |||||| |||| ||||||| || |||||    
T  46699484 gtcttggtgaggtggtttggcggcgtagt 46699456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 38929329 - 38929388
Alignment:
Q  288 ccttggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgttgcagg 348  Q
    |||||||||||| |||||||||| |||||| ||||||| |||| |||| ||||||||||||    
T  38929329 ccttggagactt-caacctcattttcttgcacttgtgcatgcttaaccgtggtgttgcagg 38929388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 46699378 - 46699319
Alignment:
Q  288 ccttggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgttgcag 347  Q
    |||| |||||||||| ||||  | |||||||||||||||||||||||  |||||||||||    
T  46699378 ccttcgagactttcagcctcgctatcttgctcttgtgcttgctgaacaatggtgttgcag 46699319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 30963892 - 30963941
Alignment:
Q  167 cttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    |||||||||||||||| ||||||||| |||| ||||| |||| |||||||    
T  30963892 cttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcct 30963941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 19597812 - 19598080
Alignment:
Q  9 cgtgttgacagtggtagtcatttatgtatcttcagacctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgt 108  Q
    ||||||| | |||||||||||| ||||| ||| ||| |||||||||||   ||  ||| | ||||| | ||||||||||| |||||||||||| ||||      
T  19597812 cgtgttggcggtggtagtcattcatgtacctttagatctttttgggtcctttt--tgggctcttgt-gttttttggcttggttgttgtttacttcggcac 19597908  T
Q  109 cagacgccttctcctcgtcactaacgaatgcatgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttc 208  Q
     |||||||||||||| || ||  ||| |||  ||||||||||||| ||||||| | | ||||| ||||||||||||||||||||  ||||||||||||||    
T  19597909 gagacgccttctccttgttaccgacggatgtctgtttacgatctaggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttc 19598008  T
Q  209 atcttccttttggtttgtgttcaggttgcttcctgtttcttggcgagggggtttggaggtgtagtctttgtc 280  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  19598009 atcttccttttggtttgtgtttgggttgctgcctgtttcttggcgaggtggtttggaggcgtagcctttgtc 19598080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 280
Target Start/End: Complemental strand, 46693552 - 46693414
Alignment:
Q  141 tgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttc 240  Q
    |||||||||| || |||| || | ||||||| |||||||||| |||||||||  ||||||| | |||||||| ||||| ||| |||||| |||| | | |    
T  46693552 tgtttacgatttaggttgagtttccgcttcagaccggcgtcgctgcccgtgttctgttgttagttttcatct-cctttgggtctgtgtttaggtcgatgc 46693454  T
Q  241 ctgtttcttggcgagggggtttggaggtgtagtctttgtc 280  Q
    |||||||||||||||| |||||||||| || ||| |||||    
T  46693453 ctgtttcttggcgaggtggtttggaggcgttgtccttgtc 46693414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 222
Target Start/End: Complemental strand, 24450605 - 24450444
Alignment:
Q  60 ttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtttacgatctaagttgt 159  Q
    ||||||| | |||||  |||||||| ||| ||| ||||||||  ||||  ||| |||||||||| |||||   |  |||| ||||||||| ||| || ||    
T  24450605 ttggtgggctcttgtcactttttggattggttggtgtttactgtggcgctagatgccttctccttgtcaccgtcagatgcctgtttacgacctaggtagt 24450506  T
Q  160 gtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggt 222  Q
    ||   |||||||||| | ||||| ||||||||| |||||||||||||||||||||||||||||    
T  24450505 gttcccgcttcaaactg-cgtcgctgcccgtgttttgttgttgggtttcatcttccttttggt 24450444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 41919909 - 41919960
Alignment:
Q  165 cgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    ||||||||||| |||||||||||||||| ||||||| || ||||||||||||    
T  41919909 cgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcct 41919960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 50590156 - 50590073
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtca 128  Q
    ||||||||||||| |||||||  | ||||| || |||||||||| |||||||||||| ||||||  |||||||| |||| ||||    
T  50590156 cctttttgggtcgcgttggtgtgctcttgtcgcattttggcttggttgttgtttacttcggcgttggacgccttttccttgtca 50590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 31586335 - 31586287
Alignment:
Q  165 cgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatctt 213  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||| ||||    
T  31586335 cgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctt 31586287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 46694017 - 46693961
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttact 101  Q
    ||||||||||||| |||||||| | ||||| ||||||||| ||| ||||||||||||    
T  46694017 cctttttgggtcgtgttggtgggctcttgtcgctttttggtttggttgttgtttact 46693961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Complemental strand, 50589851 - 50589795
Alignment:
Q  288 ccttggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgttg 344  Q
    ||||| ||||| |||||||  |||||||||||||||||||||||| || ||||||||    
T  50589851 ccttgaagactatcaaccttgttgtcttgctcttgtgcttgctgatccgtggtgttg 50589795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 24685142 - 24685106
Alignment:
Q  166 gcttcaaaccggcgtcgttgcccgtgtcttgttgttg 202  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  24685142 gcttcaaaccggcgtcgctgcccgtgttttgttgttg 24685106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 45 - 280
Target Start/End: Original strand, 27712307 - 27712542
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtt 144  Q
    |||||| |||| | |||||||| | ||||| ||||||||||||| |||||||||||||||| | ||||||||||||||| |||||    |  ||| ||||    
T  27712307 ccttttagggtagtgttggtgggctcttgttgctttttggcttggttgttgtttactccggtgccagacgccttctccttgtcaccggtggttgcctgtt 27712406  T
Q  145 tacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgt 244  Q
    |||||||||  |||||| |   ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  ||||| |  ||||    
T  27712407 tacgatctagattgtgtttctacttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttccttttggtctgtgtttgggttgttgtctgt 27712506  T
Q  245 ttcttggcgagggggtttggaggtgtagtctttgtc 280  Q
    |||||||||||| |||||||||| || |||||||||    
T  27712507 ttcttggcgaggtggtttggaggcgtggtctttgtc 27712542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 280
Target Start/End: Complemental strand, 22687411 - 22687153
Alignment:
Q  22 gtagtcatttatgtatcttcagacctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctc 121  Q
    |||||| || ||||| ||||| | | |||| ||||| |||||||| | ||| | |||||||| |||| |||||||||||||||||||  |||||||||||    
T  22687411 gtagtctttcatgtaccttcaaatcattttaggtcgtgttggtgggctcttttcgctttttgacttggttgttgtttactccggcgttggacgccttctc 22687312  T
Q  122 ctcgtcactaacgaatgcatgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttgg 221  Q
    || ||||||  || |||| ||||||||||| | ||||||| | ||||||| ||  | |||| ||| ||||| |||||||| ||||||||||||||||||     
T  22687311 cttgtcactggcggatgcctgtttacgatccaggttgtgtttccgcttcagacttgtgtcgctgctcgtgttttgttgttaggtttcatcttccttttga 22687212  T
Q  222 tttgtgttcaggttgcttcctgtttcttggcgagggggtttggaggtgtagtctttgtc 280  Q
    | ||||||  |||| |  | ||||||||||||||| ||||||| || ||||||||||||    
T  22687211 tatgtgtttgggtttcaacatgtttcttggcgaggtggtttggcggcgtagtctttgtc 22687153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 697615 - 697834
Alignment:
Q  47 tttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgttta 146  Q
    ||||||||||| |||||||| | ||||| ||||||| | ||| |||||||||||| ||| | | || |||||||||| ||||||  |   ||| ||||||    
T  697615 tttttgggtcgtgttggtgggctcttgtcgcttttttgtttggttgttgtttacttcggtgccggaagccttctccttgtcactggcatgtgcctgttta 697714  T
Q  147 cgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgttt 246  Q
    ||||||| |||| || | ||||||| |||||||||| |||||||||  ||||||| ||||||||| |||||||||| |||||| ||||   | | |||||    
T  697715 cgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgtgctgttgttaggtttcatc-tccttttggtatgtgtttaggtcaatgcttgttt 697813  T
Q  247 cttggcgagggggtttggagg 267  Q
    |||| ||||| ||||||||||    
T  697814 cttgacgaggtggtttggagg 697834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 27712614 - 27712672
Alignment:
Q  288 ccttggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgttgca 346  Q
    |||| ||||||||||||||| |||| |||||||||||| ||||||| |  |||||||||    
T  27712614 ccttagagactttcaacctcgttgtattgctcttgtgcctgctgaatcggggtgttgca 27712672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 264
Target Start/End: Original strand, 2062149 - 2062368
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtt 144  Q
    ||||||||||||  |||||||| | ||||| ||||||||||||| |||||||||| ||||| ||| ||||||||||||| ||| |    | || | ||||    
T  2062149 cctttttgggtcatgttggtgggctcttgtcgctttttggcttggttgttgtttattccggtgtcggacgccttctccttgtctccggtggatacctgtt 2062248  T
Q  145 tacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgt 244  Q
    ||||||||  ||||||| | ||||||| |||||||||| ||||||||| ||||||||||||| |||||| || ||| | ||||||   || |||||| ||    
T  2062249 tacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttgcatctttctcttgatctgtgtttgtgtagcttccagt 2062348  T
Q  245 ttcttggcgagggggtttgg 264  Q
    ||||||| |||| |||||||    
T  2062349 ttcttggtgaggtggtttgg 2062368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 31903040 - 31902967
Alignment:
Q  143 tttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    |||| |||||| ||||||| | |||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  31903040 tttatgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcct 31902967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 16959201 - 16959283
Alignment:
Q  46 ctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtca 128  Q
    |||||||||||| ||||||||   ||||| || |||||||||| ||||||||||||  |||||| |||||||| |||| ||||    
T  16959201 ctttttgggtcgtgttggtgggatcttgttgcattttggcttggttgttgtttacttgggcgtcggacgccttttccttgtca 16959283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 2062396 - 2062433
Alignment:
Q  310 tgtcttgctcttgtgcttgctgaaccttggtgttgcag 347  Q
    |||||||||||||||||||||||||  |||||||||||    
T  2062396 tgtcttgctcttgtgcttgctgaactgtggtgttgcag 2062433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 343
Target Start/End: Complemental strand, 13099232 - 13099081
Alignment:
Q  194 ttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctg-tttcttggcgagggggtttggaggtgtagtctttgtc-ctactcccctt 291  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||| |||| |||||||||| || ||||||| || |||||||||||| || ||  ||||    
T  13099232 ttgttgttgggtttcatattccttttggtttgtgtttgggttgctgcctgttttcttggcgtggtggtttggtggcgtagtctttgtctcttctttcctt 13099133  T
Q  292 ggagactttcaacctcattgtcttgctcttgtgcttgctgaaccttggtgtt 343  Q
     ||||||||||||||| ||| ||| ||||||||| ||||||||| |||||||    
T  13099132 tgagactttcaacctcgttgactttctcttgtgcctgctgaaccgtggtgtt 13099081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 12793554 - 12793615
Alignment:
Q  155 gttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    ||||||| |||||||||||| ||||||||||||||||| ||| || ||| |||| |||||||    
T  12793554 gttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcct 12793615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 37792640 - 37792806
Alignment:
Q  47 tttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgttta 146  Q
    ||||||||||| ||| |||| | ||||  ||||||||||||| ||||||| |||||| ||||||||||||| ||||| |||||   ||| ||| | ||||    
T  37792640 tttttgggtcgtgtttgtgggctcttgctgctttttggcttggttgttgtctactccagcgtcagacgcctactccttgtcaccggcgattgccttttta 37792739  T
Q  147 cgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatctt 213  Q
    |||| |  ||||||| | ||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  37792740 cgatatgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctt 37792806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 267
Target Start/End: Original strand, 10243439 - 10243660
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtt 144  Q
    ||||||||||| | ||||||||   ||||| ||||||  | ||| |||||||||| | ||| || ||||||||||| ||||||||  |||  ||| || |    
T  10243439 cctttttgggttgtgttggtgggatcttgtcgcttttctgtttggttgttgtttaattcggtgttagacgccttcttctcgtcaccgacgggtgcctgct 10243538  T
Q  145 tacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgt 244  Q
    ||||||||| |||| || | ||||||| ||| |||||  |||||||||  | ||||| ||||||||| |||||||||| |||||| | || | | | |||    
T  10243539 tacgatctaggttgagtttccgcttcagaccagcgtcactgcccgtgttctattgttaggtttcatc-tccttttggtctgtgtttaagtcgatgcttgt 10243637  T
Q  245 ttcttggcgagggggtttggagg 267  Q
    |||||||||||| ||||| ||||    
T  10243638 ttcttggcgaggtggtttagagg 10243660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 38165754 - 38165702
Alignment:
Q  71 ttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcct 123  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  38165754 ttgtagctttttggttgggttgttgtttactccggcgtcagacgccttctcct 38165702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 38484992 - 38485059
Alignment:
Q  155 gttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggt 222  Q
    ||||||| | |||||||||||||||||| ||||| ||| |||||||  |||||| ||||||| |||||    
T  38484992 gttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcctcttggt 38485059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 1320127 - 1320204
Alignment:
Q  141 tgtttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttt 218  Q
    ||||||||||||| |||||||   | ||||  |||||||||| || |||||| |||||||||||||||  ||||||||    
T  1320127 tgtttacgatctaggttgtgttcccacttcggaccggcgtcgatgtccgtgttttgttgttgggtttcggcttccttt 1320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 3420315 - 3420242
Alignment:
Q  143 tttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    |||| |||||| ||||||  | |||||| ||||||||||| ||| ||||| |||||||| |||||| |||||||    
T  3420315 tttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 266
Target Start/End: Complemental strand, 37987685 - 37987465
Alignment:
Q  45 cctttttgggtcgggttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtt 144  Q
    ||||||||||||| | |||||| | ||||| |||| |||| ||| |||||||||||| ||| | | || |||||||||| |||||   ||  ||| ||||    
T  37987685 cctttttgggtcgtgatggtgggctcttgtcgcttgttggtttggttgttgtttacttcggtgccggaagccttctccttgtcaccggcgggtgcgtgtt 37987586  T
Q  145 tacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgt 244  Q
    ||||||||| |||| || | ||||||| |||||||||| |||||||||  ||||||| ||||||||| |||| ||| | |||||| | || | | | |||    
T  37987585 tacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttatgttgttaggtttcatc-tcctcttgttatgtgtttaagtcgatgcttgt 37987487  T
Q  245 ttcttggcgagggggtttggag 266  Q
    |||||||||||| |||||||||    
T  37987486 ttcttggcgaggtggtttggag 37987465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 34866691 - 34866640
Alignment:
Q  165 cgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    |||||||||||||||||| ||||||||| |||||||||| |||| |||||||    
T  34866691 cgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 9519068 - 9519116
Alignment:
Q  165 cgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatctt 213  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||| ||||    
T  9519068 cgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctt 9519116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 10551755 - 10551806
Alignment:
Q  165 cgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    ||||||||| |||||||| ||||||||  ||||||||||||||| |||||||    
T  10551755 cgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcct 10551806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 266
Target Start/End: Original strand, 45163256 - 45163461
Alignment:
Q  60 ttggtggtcacttgtagctttttggcttgattgttgtttactccggcgtcagacgccttctcctcgtcactaacgaatgcatgtttacgatctaagttgt 159  Q
    ||||||| | ||||| ||||||||| ||| ||| ||||||||  || | ||||||||||||| | |||||   || |||| ||||||||| ||| || ||    
T  45163256 ttggtgggctcttgtcgctttttggattggttggtgtttactgtggtgccagacgccttctctttgtcaccgtcggatgcctgtttacgaactaggtagt 45163355  T
Q  160 gtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgtttcttggcgaggggg 259  Q
    || | |  |||| || |||||||||| | |||| |||||||||||||||||||||||||| || ||| ||  |||| || ||||||||||||||||| ||    
T  45163356 gt-tcccattcagactggcgtcgttgtctgtgttttgttgttgggtttcatcttccttttagtctgtatttgggttactgcctgtttcttggcgaggtgg 45163454  T
Q  260 tttggag 266  Q
    |||||||    
T  45163455 tttggag 45163461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 1653571 - 1653499
Alignment:
Q  144 ttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    |||||||||  ||||| | |||||||||||||||||||| ||||||||| |||||||||| |||| |||||||    
T  1653571 ttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcct 1653499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 2394825 - 2394726
Alignment:
Q  167 cttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttccttttggtttgtgttcaggttgcttcctgtttcttggcgagggggtttggag 266  Q
    ||||| |||||||||| || | |||| ||||| ||||||||||||||||||||||| ||| ||  |||| || |||||||| |||||||| | |||||||    
T  2394825 cttcagaccggcgtcgctgtctgtgttttgttattgggtttcatcttccttttggtctgtatttgggttactgcctgtttcctggcgaggtgctttggag 2394726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 17501889 - 17501816
Alignment:
Q  143 tttacgatctaagttgtgtcttcgcttcaaaccggcgtcgttgcccgtgtcttgttgttgggtttcatcttcct 216  Q
    ||||||||||| ||||||| | |||||||||| | |||| ||| |||||| |||||||| | |||| |||||||    
T  17501889 tttacgatctaggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcct 17501816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 343
Target Start/End: Original strand, 5971 - 6113
Alignment:
Q  203 ggtttcatcttccttttggtttgtgttcaggttgcttcc-tgtttcttggcgagggggtttggaggtgtagtctttgtc-ctactccccttggagacttt 300  Q
    |||||||||||||||||||||||||||  ||||| | || | |||||||| | || ||||| | || |||||||||||| || ||  ||||||||| |||    
T  5971 ggtttcatcttccttttggtttgtgtttgggttgttgccatttttcttggtgtggtggtttcgtggcgtagtctttgtctcttctttccttggagatttt 6070  T
Q  301 caacctcattgtcttgctcttgtgcttgctgaaccttggtgtt 343  Q
    ||||||| ||| ||||||||||||| | ||||||| |||||||    
T  6071 caacctcgttgacttgctcttgtgcctcctgaaccgtggtgtt 6113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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