View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6932_low_9 (Length: 347)
Name: NF6932_low_9
Description: NF6932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6932_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 42332954 - 42332629
Alignment:
| Q |
18 |
ttaacatggtttctgtctaagaaataaaatccaacagcagcagcaagagtaggcacagctacataaatacttcccatagccatattaa-ctctcaagtta |
116 |
Q |
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| T |
42332954 |
ttaacatggtttctgtctaagaaataaaatccaacagcagcagcaagagtaggcacagctacataaatacttcccatagccatattaatctctcaagtta |
42332855 |
T |
|
| Q |
117 |
aattaacatttagccattttttcaacattgattgtatttgtatggatagcaagggtagacagagagaatatgccttggcaatgaagagaagcaaacatac |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42332854 |
aattaacatttagccatttttgcaacattgattgtatttgtatggatagcaagggtagacagagagaatatgccttggcaatgaagagaagcaaacatac |
42332755 |
T |
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| Q |
217 |
aaaaatggataaaaatggctagtaaagttgggttagcattgccttgaaccatgagaaagggaaacttgaaatgaaagtaacgtatgaactaatgccaaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42332754 |
aaaaatggataaaaatggctagtaaagttgggttagcattgccttgaaccatgagaaagggaaacttgaaatgaaagtaacgtatgaactaatgccaaag |
42332655 |
T |
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| Q |
317 |
aaaaactttatttcatctatgctact |
342 |
Q |
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||||||||||||||||||||| |||| |
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| T |
42332654 |
aaaaactttatttcatctatgttact |
42332629 |
T |
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