View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6933_high_3 (Length: 308)
Name: NF6933_high_3
Description: NF6933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6933_high_3 |
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| [»] scaffold1430 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 6298996 - 6299276
Alignment:
| Q |
19 |
gaaacaaacttcattgttttaatttctaatttttatgtcacggattcaacatttctacgattttaattcttttcaccaacctttgttttttagaaaattt |
118 |
Q |
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| T |
6298996 |
gaaacaaacttcattgttttacgttctaatttttatttcacggattcaacatttctatgattttaattcttttcaccaacctttgatttttagaaaattt |
6299095 |
T |
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| Q |
119 |
atgatcttggtggtcgaaaatttgtgatcggtagcattggtccaattgggtgtgccccatcatttattattagaacatcaagttcaaaagattgcaatga |
218 |
Q |
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| T |
6299096 |
atgatcttggtggtcgaaaatttgtgatcggtagcattggtccaattgggtgtgccccatcatttattaatagaacatcaagttcaaaagattgcaatga |
6299195 |
T |
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| Q |
219 |
agatatgaatcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaactcacaggttc |
299 |
Q |
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| T |
6299196 |
agatatgaatcaaaaggttaaacccttctcaaacaaactcccatggaagcttcaagagttgcagactcaactctcaggttc |
6299276 |
T |
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Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 110 - 299
Target Start/End: Original strand, 25464221 - 25464410
Alignment:
| Q |
110 |
agaaaatttatgatcttggtggtcgaaaatttgtgatcggtagcattggtccaattgggtgtgccccatcatttattattagaacatcaagttcaaaaga |
209 |
Q |
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| T |
25464221 |
agaaaatttatgatcttggtggacgaaaatttgttatcattgccattggtccaatagggtgtatcccagattttattgataaaaactcacgttcaaaaga |
25464320 |
T |
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| Q |
210 |
ttgcaatgaagatatgaatcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaactcacaggttc |
299 |
Q |
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| T |
25464321 |
ttgcaatgaagatatgaatcaaatggttaagcctttctcaaacaaacttccatggaagcttcgagagttaacgacccaactctcaggttc |
25464410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1430 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1430
Description:
Target: scaffold1430; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 105 - 290
Target Start/End: Original strand, 1574 - 1763
Alignment:
| Q |
105 |
tttttagaaaatttatgatcttggtggtcgaaaatttgtgatcggtagcattggtccaattgggtgtgc----cccatcatttattattagaacatcaag |
200 |
Q |
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| T |
1574 |
ttttcagaaaatttatgatcttggtggacgaaaatttgtgatcattggcattggaccaatcgggtatatatatcccatattttattaataatacatcacg |
1673 |
T |
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| Q |
201 |
ttcaaaagattgcaatgaagatatgaatcaaaaggttaagcccttctcaaacaaactcccatggaagcttcaagagttgaagacccaact |
290 |
Q |
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| T |
1674 |
ttcaaaagattgcaatgaagatgtgaatcaaaagcttaagcctttttcaaccaaactcccatggaagcttcaagagttgaagactcaact |
1763 |
T |
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