View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6933_low_1 (Length: 796)
Name: NF6933_low_1
Description: NF6933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6933_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 695
Target Start/End: Original strand, 38157680 - 38158384
Alignment:
| Q |
1 |
agtcaaacattaacaattatctattttaatttattatttcaaaaaagcaagacaaattagtcccgtccggcggggatacatgcgcaactacgccgtggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38157680 |
agtcaaacattaacaattatctattttaatttattattccaaaaaagcaagacaaattagtcccgtccggcggggatacatgcgccactacgccgtggtt |
38157779 |
T |
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| Q |
101 |
ccggattggaaggcataggaatctagaaagtcaaatcattgcatgtgttgtttccaaatggaacccgcagca------tgcatgtgctctctttggaaag |
194 |
Q |
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| T |
38157780 |
ccggattggaaggcataggaatctataaagtcaaatcattgcatgtgttgtttccaaatggaacccgcagcagcagcatgcatgtgctctctttggaaag |
38157879 |
T |
|
| Q |
195 |
tcacctttccgagaccattgtttactg-ctttgtccagctctttcttaactaacaacaacaacaacgtgacatgcgcaaacaaacgtgtagccacatcaa |
293 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38157880 |
tcacctttccgagaccattgtttactgtctttgtccagctctttcttaactaacaacaacaac---gtgacatgcgcaaacaaacgtgtagccacatcaa |
38157976 |
T |
|
| Q |
294 |
ctcagattagtgttctatt-atgccgaacaatgtgggtggacccacttgaaaggagnnnnnnntatgacaacctatatcaaaataaaaagttaacaaaag |
392 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38157977 |
ctcatattagtgttctatttatgccgaacaatgtgggtggacccacttgaaaggagaaaaaaatatgacaacctatatcaaaataaaaagttaacaaaag |
38158076 |
T |
|
| Q |
393 |
aatt-----tttagtttagtttagaaattctcgaattggttaattgatggtgatttacgcggtattggtcacataatgaaattggaattttgaatcattg |
487 |
Q |
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|||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38158077 |
aattgttagtttagtttagtttagaaattctccatttggttaattgatggtgatttacgcggtattggtcacataatgaaattggaattttgaatcattg |
38158176 |
T |
|
| Q |
488 |
caacttataaatgcttaatccaaaagacaagggacaaacatcgctatctgctcactagtaaacaacacaacaaaatacagcaaatattcttctcataatt |
587 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38158177 |
caacttataaatgcttaatccaaaagacaaaggacaaacatcgttatctgctcactagtaaacaacacaacaaaatacagcaaatattcttctcataatt |
38158276 |
T |
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| Q |
588 |
aacatatgttaaatatatcatacaattaacgtttctataataatattttctatctaacaatcccaaacactaacaaaccaattcagacttatacatcagg |
687 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38158277 |
aaaatatgttaaatatatcatacaattaacgtttctataataatattttctatctaacaatcccaaacactaacaaaccaattcagacttatacatcagg |
38158376 |
T |
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| Q |
688 |
agagattg |
695 |
Q |
| |
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|||||||| |
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| T |
38158377 |
agagattg |
38158384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 743 - 777
Target Start/End: Original strand, 38158432 - 38158466
Alignment:
| Q |
743 |
ttgtgatacaatttcgcaatgctgcttgatcaaaa |
777 |
Q |
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| T |
38158432 |
ttgtgatacaatttcgcaatgctgcttgatcaaaa |
38158466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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