View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6933_low_4 (Length: 292)
Name: NF6933_low_4
Description: NF6933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6933_low_4 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 2497963 - 2497685
Alignment:
| Q |
11 |
tatgaaggttttcttgggataaatgactcatttccttggatactatctgttaggaaccaacaatagctcactattagtgttcgtttttgttttattcaca |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497963 |
tatgaaggttttcatgggataaatgactcatttccttggatactatctgttaggaaccaacaatagctcactattagtgttcgtttttgttttattcaca |
2497864 |
T |
|
| Q |
111 |
aatgatattgtacaacatatgttattattgatgactatcacatatttttctgccattctgttgtgcattttaacatatgttgtttttctgtgaacacagg |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2497863 |
aatgatattgtacaacatatgttatt---gatgactatcgcatatttttctgccattctgttgtgcattttaacatatgttgtttttctgtgaacacagg |
2497767 |
T |
|
| Q |
211 |
tatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgcc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2497766 |
tatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgtttcagctgcc |
2497685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 1458972 - 1459058
Alignment:
| Q |
206 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgcc |
292 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
1458972 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcc |
1459058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 2428679 - 2428765
Alignment:
| Q |
206 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgcc |
292 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
2428679 |
acaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctctcctaagaaaggagagaatgtttttgtttcagctgcc |
2428765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 2513123 - 2513025
Alignment:
| Q |
194 |
ttttctgtgaacacaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgcc |
292 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||| |||||||||||||| ||||| ||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
2513123 |
ttttctctgaaaacaggtatgccaggaatgactgcttattctggtttctttgaagtaggctctcccaagaaaggagagaatgtttttgtttcagctgcc |
2513025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 2435046 - 2435131
Alignment:
| Q |
206 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgc |
291 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |
|
|
| T |
2435046 |
acaggtatgccgggaatgactgcatatgctggtttctttgaattaggcagtcctaagaaaggagagaatgtttatgtttcagctgc |
2435131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 292
Target Start/End: Complemental strand, 2506497 - 2506412
Alignment:
| Q |
207 |
caggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctgcc |
292 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||| | | ||||||||||||| |||||||||| |||||||| |
|
|
| T |
2506497 |
caggtatgccaggaatgactgcttatgctggtttctttgaagtaggcgctaccaagaaaggagagaatgtttttgtttcagctgcc |
2506412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 2517486 - 2517386
Alignment:
| Q |
191 |
tgtttttctgtgaacacaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagctg |
290 |
Q |
| |
|
||||||| | ||| |||||||||||||||||| || ||||||||||||||||||||| ||||| ||| || |||||||||| |||||||||| |||||| |
|
|
| T |
2517486 |
tgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctctccgaaaaaaggagagaatgtttttgtttcagctg |
2517387 |
T |
|
| Q |
291 |
c |
291 |
Q |
| |
|
| |
|
|
| T |
2517386 |
c |
2517386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 2431656 - 2431738
Alignment:
| Q |
206 |
acaggtatgccaggaataactgcttatgctggtttctttgaactaggcagtcctaagaaaggagagactgtttttgttccagc |
288 |
Q |
| |
|
|||||||||| ||| | ||||| |||| ||||||||||||| |||||||||||||||||||||| | ||||| |||| |||| |
|
|
| T |
2431656 |
acaggtatgctgggattgactgcatatgttggtttctttgaattaggcagtcctaagaaaggagaaaatgtttatgtttcagc |
2431738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University