View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6933_low_5 (Length: 262)
Name: NF6933_low_5
Description: NF6933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6933_low_5 |
 | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
| [»] scaffold0502 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 47300785 - 47301020
Alignment:
| Q |
11 |
gaacctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatc |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
47300785 |
gaacctgtatgagtcgaatgggacggtccataatttgttccgagcctcgaacatcatataggagttgatggaagcaagggaatggaggatgcagggcatc |
47300884 |
T |
|
| Q |
111 |
accaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
47300885 |
accaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacttgcgactagctccctccctaatc |
47300984 |
T |
|
| Q |
211 |
cttcccgcaaatggatagtaataaacaagtgcttgt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47300985 |
cttcccgcaaatggatagtaataaacaagtgcttgt |
47301020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 47296207 - 47296423
Alignment:
| Q |
25 |
cgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcaccaaattgatcaa |
124 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47296207 |
cgaatgggacggtcgataatttgtgttgagcctggaacatcatataggagttgttggaagcaagggaatggaggatgcagggcatcaccaaattgatcaa |
47296306 |
T |
|
| Q |
125 |
gtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatccttcccgcaaatgg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
47296307 |
gtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccatcaacttgcgcccagctccctccctaattcttcccgcaagtgg |
47296406 |
T |
|
| Q |
225 |
atagtaataaacaagtg |
241 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
47296407 |
atagtaatacacaagtg |
47296423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 47240998 - 47240817
Alignment:
| Q |
13 |
acctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcac |
112 |
Q |
| |
|
|||||| |||||| ||||| |||||| ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47240998 |
acctgtatgagtcaaatggtacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagcatcac |
47240899 |
T |
|
| Q |
113 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |
|
|
| T |
47240898 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccttcaccagtacaatccaccatcaacttgcgcct |
47240817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 47255950 - 47255722
Alignment:
| Q |
13 |
acctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcac |
112 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||| | ||||||||||||||||||| |||| | || ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
47255950 |
acctgtataagtcggatgggacggtcaataatatattctgagcctggaacatcacatagaatttcttggaagcaaggaaatggaggttgcagagcatcac |
47255851 |
T |
|
| Q |
113 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatcct |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
47255850 |
caaattgatcaagtgttatatcagcttcagcttcaatgaacatgacaccctccccggtgcaatccaccatcaacttgcgcccagcaccctccctaatcct |
47255751 |
T |
|
| Q |
213 |
tcccgcaaatggatagtaataaacaagtg |
241 |
Q |
| |
|
||| ||| |||||||||||||||||||| |
|
|
| T |
47255750 |
tcctgcacctggatagtaataaacaagtg |
47255722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 47264994 - 47264761
Alignment:
| Q |
13 |
acctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcac |
112 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||| || ||||||||||| ||||| |||| | |||||| |||| ||| ||||||| ||| |||| |
|
|
| T |
47264994 |
acctgtatgagtcgaatgggacggtcaataattagttccgatcctggaacatcgtatagaagttcttcgaagcatgggagtgggggatgcaaagcgtcac |
47264895 |
T |
|
| Q |
113 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatcct |
212 |
Q |
| |
|
| |||| |||||| |||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||| |||| | ||| |||||||||||||| |
|
|
| T |
47264894 |
cgaattcatcaagggttacatcagcttcagcttcaacgaacataactccctcgccagtacaatcgaccatcaacttgcgtccagcaccctccctaatcct |
47264795 |
T |
|
| Q |
213 |
tcccgcaaatggatagtaataaacaagtgcttgt |
246 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |
|
|
| T |
47264794 |
tcctgcaaatggatagtaataaacaagtgcttgt |
47264761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 246
Target Start/End: Complemental strand, 47275549 - 47275329
Alignment:
| Q |
26 |
gaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcaccaaattgatcaag |
125 |
Q |
| |
|
|||||||| | || |||||||| | || |||||||||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
47275549 |
gaatgggatgatcaataatttggtttgtgcctggaacatcgtatatgagttcttggaagcaagggaatgggggatgcagtgcatcaccaaattcatcaag |
47275450 |
T |
|
| Q |
126 |
tgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatccttcccgcaaatgga |
225 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| ||||| || |||||||||||||||||| || |||||||||||||||||| |||||||||| |||| |
|
|
| T |
47275449 |
tgtaacatcagtttcagcttcaatgaacatgactccctcaccggtacaatccaccatcaacttgtccctagctccctccctaattcttcccgcaagtgga |
47275350 |
T |
|
| Q |
226 |
tagtaataaacaagtgcttgt |
246 |
Q |
| |
|
|| ||||||||||||| |||| |
|
|
| T |
47275349 |
taataataaacaagtgtttgt |
47275329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 47282259 - 47282072
Alignment:
| Q |
57 |
tggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatg |
156 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
47282259 |
tggaacatcatatatgagttcttggaagcaagggaatgggggatgaagagcatcaccaaattcattaagtgttacatcagcttcagcttcaatgaacatg |
47282160 |
T |
|
| Q |
157 |
acaccct---cgccagtacaatccaccatcaacctgcgcctagctccctccctaatccttcccgcaaatggatagtaataaacaagtg |
241 |
Q |
| |
|
||||| | | |||||||||||||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
47282159 |
acaccttcaccaccagtacaatccaccatcaatttgtccctagctccctccctaattcttcccgcaagtggatagtaataaacaagtg |
47282072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 32729663 - 32729435
Alignment:
| Q |
13 |
acctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcac |
112 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32729663 |
acctgtatgagtcgaatgggacggtcaataatatgttctgagcctggaacatcgtataagagttgttggaagcaagggaatggaggatgcagagcatcac |
32729564 |
T |
|
| Q |
113 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
32729563 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacacgacaccctcaccagtacaatccaccatcaacttgcgcctagcaccctccctaatcct |
32729464 |
T |
|
| Q |
213 |
tcccgcaaatggatagtaataaacaagtg |
241 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |
|
|
| T |
32729463 |
tcccgcaaatgggtagtaatacacaagtg |
32729435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 15548732 - 15548783
Alignment:
| Q |
112 |
ccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctc |
164 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| ||||||||||| |||||||| |
|
|
| T |
15548732 |
ccaaattgttcaagtgttacat-agcatcagcctcaatgaacatcacaccctc |
15548783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 20512000 - 20511767
Alignment:
| Q |
13 |
acctgtgtgagtcgaatgggacggtccataatttgttctgagcctggaacatcatataggagttgatggaagcaagggaatggaggatgcagagcatcac |
112 |
Q |
| |
|
|||||| | |||||||||||||| || ||| || || | || |||||||||| ||||| |||| || || ||| |||||||| ||||||| | | |||| |
|
|
| T |
20512000 |
acctgtataagtcgaatgggacgatcaatatttagtaccgaatctggaacatcgtatagaagttcatcgacgcatgggaatgggggatgcaaaccgtcac |
20511901 |
T |
|
| Q |
113 |
caaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccatcaacctgcgcctagctccctccctaatcct |
212 |
Q |
| |
|
|||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| | | | | |||| ||||||||||| |
|
|
| T |
20511900 |
caaagtcatcaagtgttacattagcttcagcttcaatgaacatgacaccctcaccagtacaatccaccattaacttttgtccaactccttccctaatcct |
20511801 |
T |
|
| Q |
213 |
tcccgcaaatggatagtaataaacaagtgcttgt |
246 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |
|
|
| T |
20511800 |
tcccgcaaatggatagtaatgcacaagtacttgt |
20511767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 91706 - 91806
Alignment:
| Q |
82 |
aagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccacca |
181 |
Q |
| |
|
||||| || ||||||||||| || |||||||||||||| | ||| || |||||||| ||||||||||| |||| ||||| || ||||||||||| |||| |
|
|
| T |
91706 |
aagcatggaaatggaggatgaagtgcatcaccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaacca |
91805 |
T |
|
| Q |
182 |
t |
182 |
Q |
| |
|
| |
|
|
| T |
91806 |
t |
91806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 36307234 - 36307164
Alignment:
| Q |
112 |
ccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccaccat |
182 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||||||||| ||||| || ||| ||||||||||||| |
|
|
| T |
36307234 |
ccaaattgttcaagtgttacatcagcatctgcctcaatgaacataacaccttctccattacaatccaccat |
36307164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 14880036 - 14880136
Alignment:
| Q |
82 |
aagcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaacatgacaccctcgccagtacaatccacca |
181 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| | | ||| || ||||| || ||||||||||| |||| ||||| || ||||| |||||||||| |
|
|
| T |
14880036 |
aagcaaggaaatggaggatgaagagcatcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccacca |
14880135 |
T |
|
| Q |
182 |
t |
182 |
Q |
| |
|
| |
|
|
| T |
14880136 |
t |
14880136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 14789595 - 14789665
Alignment:
| Q |
84 |
gcaagggaatggaggatgcagagcatcaccaaattgatcaagtgttacatcagcttcagcttcaatgaaca |
154 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||||| ||||| || |||||||| ||||||||||| |||| |
|
|
| T |
14789595 |
gcaaggaaatggaggatgaagatcttcaccaaattgttcaagagtaacatcagcatcagcttcaataaaca |
14789665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 11532 - 11568
Alignment:
| Q |
121 |
tcaagtgttacatcagcttcagcttcaatgaacatga |
157 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
11532 |
tcaagtgttacatctgcatcagcttcaatgaacatga |
11568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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