View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6934_low_1 (Length: 911)

Name: NF6934_low_1
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6934_low_1
NF6934_low_1
[»] chr3 (17 HSPs)
chr3 (22-845)||(48950422-48951286)
chr3 (575-692)||(33338139-33338256)
chr3 (567-682)||(28229361-28229477)
chr3 (842-892)||(48950329-48950379)
chr3 (575-695)||(33979921-33980041)
chr3 (633-692)||(32577511-32577570)
chr3 (565-654)||(43624333-43624423)
chr3 (213-267)||(44112030-44112084)
chr3 (213-250)||(48050687-48050724)
chr3 (621-682)||(49679284-49679345)
chr3 (625-678)||(54911658-54911711)
chr3 (567-613)||(778853-778900)
chr3 (623-698)||(20485743-20485818)
chr3 (621-679)||(19830445-19830503)
chr3 (621-682)||(25285851-25285912)
chr3 (621-682)||(31523682-31523743)
chr3 (629-682)||(42613080-42613133)
[»] chr5 (15 HSPs)
chr5 (567-685)||(9465740-9465859)
chr5 (565-698)||(43222110-43222244)
chr5 (567-682)||(35650318-35650434)
chr5 (567-696)||(3440823-3440956)
chr5 (629-698)||(2582379-2582448)
chr5 (629-698)||(9124948-9125017)
chr5 (213-257)||(3495329-3495373)
chr5 (563-681)||(14733556-14733674)
chr5 (621-687)||(38283772-38283838)
chr5 (621-698)||(23253766-23253843)
chr5 (621-682)||(2984404-2984465)
chr5 (629-682)||(17247406-17247459)
chr5 (621-682)||(18653361-18653422)
chr5 (621-678)||(31156551-31156607)
chr5 (621-682)||(36290602-36290663)
[»] chr2 (6 HSPs)
chr2 (563-698)||(41072904-41073040)
chr2 (567-695)||(373123-373252)
chr2 (565-611)||(28716264-28716310)
chr2 (621-682)||(23459860-23459921)
chr2 (621-682)||(374993-375054)
chr2 (629-682)||(30840881-30840933)
[»] chr7 (11 HSPs)
chr7 (565-697)||(675979-676112)
chr7 (567-698)||(27386897-27387029)
chr7 (636-693)||(18118529-18118586)
chr7 (563-698)||(20400036-20400168)
chr7 (565-655)||(31322032-31322123)
chr7 (621-682)||(26826053-26826114)
chr7 (647-698)||(30760293-30760344)
chr7 (621-679)||(18198259-18198317)
chr7 (621-682)||(1193711-1193772)
chr7 (215-288)||(44680253-44680326)
chr7 (621-682)||(47799914-47799975)
[»] chr1 (10 HSPs)
chr1 (565-698)||(24413243-24413373)
chr1 (630-682)||(26768895-26768947)
chr1 (621-682)||(30077658-30077719)
chr1 (637-698)||(36700851-36700912)
chr1 (637-698)||(36716955-36717016)
chr1 (619-679)||(12380922-12380982)
chr1 (619-679)||(12384989-12385049)
chr1 (621-697)||(1358406-1358481)
chr1 (621-685)||(32887794-32887858)
chr1 (629-693)||(49943991-49944054)
[»] chr8 (10 HSPs)
chr8 (580-685)||(15901448-15901553)
chr8 (565-682)||(16313954-16314071)
chr8 (615-698)||(24557416-24557499)
chr8 (564-692)||(21492764-21492894)
chr8 (621-682)||(34612564-34612625)
chr8 (629-693)||(42048521-42048585)
chr8 (653-692)||(13035135-13035174)
chr8 (633-698)||(1809811-1809876)
chr8 (575-609)||(11452964-11452998)
chr8 (621-682)||(26749562-26749623)
[»] chr6 (8 HSPs)
chr6 (632-694)||(2614455-2614517)
chr6 (635-685)||(27096001-27096051)
chr6 (644-682)||(2165525-2165563)
chr6 (644-682)||(2177158-2177196)
chr6 (621-682)||(24484879-24484940)
chr6 (629-682)||(32254053-32254106)
chr6 (565-693)||(1514730-1514859)
chr6 (649-682)||(17269212-17269245)
[»] chr4 (13 HSPs)
chr4 (621-682)||(56453834-56453895)
chr4 (592-697)||(54588845-54588950)
chr4 (215-267)||(35850096-35850148)
chr4 (302-360)||(9277258-9277316)
chr4 (621-691)||(38865268-38865338)
chr4 (621-679)||(39862520-39862578)
chr4 (621-679)||(56558282-56558340)
chr4 (621-682)||(1015868-1015929)
chr4 (636-697)||(3512353-3512414)
chr4 (629-682)||(5524447-5524500)
chr4 (215-248)||(17621942-17621975)
chr4 (629-682)||(42010117-42010170)
chr4 (621-682)||(56269090-56269151)
[»] scaffold0027 (1 HSPs)
scaffold0027 (215-262)||(25758-25805)
[»] scaffold0286 (1 HSPs)
scaffold0286 (644-682)||(16846-16884)
[»] scaffold0171 (1 HSPs)
scaffold0171 (621-682)||(17320-17381)


Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 22 - 845
Target Start/End: Complemental strand, 48951286 - 48950422
Alignment:
Q  22 agactcttctaaagggaggtgttgtacgttaatgcaaatgannnnnnnn-cctgaatgacagtgtcgcaaatatctttgttaaatgtgttaacatttgaa 120  Q
    |||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48951286 agactcttctaaagggaggtgttgtatgttaatgcaaatgatttttttttcctgaatgacagtgttgcaaatatctttgttaaatgtgttaacatttgaa 48951187  T
Q  121 nnnnnnnagattgtcaaagctggcatattattatccaaatgtttcaatgttttactgagctgttgaacttttttaatgtttattgcatctgccaaaagaa 220  Q
           |||||||||||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||    
T  48951186 tttttttagattgtcaaagcttgcatattgttatccaaatatttcaatgttttactgagctattgaactttttcaatgtttattgcatctgcagaaagaa 48951087  T
Q  221 gtttttcaaagttaaaattattgaaaaattatttgaggccgtcaatgggacaataaaagtttgatgatctagtaattttatatatgatagagcatattaa 320  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48951086 gtttttcaaaattaaaattattgaaaaattatttgaggccgtcaacgggacaataaaagtttgatgatctagtaattttatatatgatagagcatattaa 48950987  T
Q  321 tatagacacaattattagtgactctgcatatacaaatgcttgtatggacattttgatattaaataaatattgaatgnnnnnnngtatgaagtttgatgtt 420  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||        ||||||||||||||||    
T  48950986 tatagacacaattattagtgactctgcatatacaaatgctcgaatggacattttgatattaaataaatattcaatgtttttttttatgaagtttgatgtt 48950887  T
Q  421 ttatcaaattatttcttaacataataaaacttcatcttcaaa------------caaactttgggaattaaacttttatatatacttattagttagtgcc 508  Q
    |||||||||||||||||||| |||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||| |||    
T  48950886 ttatcaaattatttcttaacgtaataaaacttcatcttcaaacaatatttttttcaaactttgggaattaaacttttatatatacttattagttagagcc 48950787  T
Q  509 taaattgtaggcttgttctaggctctccaaaatctc--aaacgactttgggtgtggatgagttgagat-ctctccatttataaaattaaatggagattac 605  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48950786 taaattgtaggcttgttctaggctctccaaaatctcaaaaacgactttgggtgtggatgagttgagatcctctccatttataaaattaaatggagattac 48950687  T
Q  606 cattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgt---------g 696  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||              
T  48950686 cattattaaagataaagacacataaaataggtggtggatcctatcattaaatgagtctcaccatcattaattattttcaagattttttgtatttttatct 48950587  T
Q  697 tcgtaaatggatgaaat----------------ggagaggatctcaactcgggtgtggatgatccagaaatcgtagaaatgtgctattttctcaataagg 780  Q
    | |||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950586 ttgtaaatggatgaaatagagaagagtttaaatggagaggatctcaactcgggtgtggatgatccagaaatcgtagaaatgtgctattttctcaataagg 48950487  T
Q  781 tagtcaatttagagcaattgatggatcaaataaaatgctcctcttcaaagtggtttatgcatgta 845  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  48950486 tagtcaatttagagcaattgatggatcaaataaaatcctcctcttcaaaatggtttatgcatgta 48950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 575 - 692
Target Start/End: Original strand, 33338139 - 33338256
Alignment:
Q  575 ctctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcatta 674  Q
    ||||| |||||||||| ||||| ||||||  ||| |  ||| | || |||||| |||||||| ||||||| |||||||||||||||||||| ||||||||    
T  33338139 ctctcaatttataaaaataaatagagattgtcataaggaaagaaaaggacacacaaaataggaggtgggtcctatcattaaatgagtctcatcatcatta 33338238  T
Q  675 attattttcaagattttt 692  Q
    | ||||||||||||||||    
T  33338239 actattttcaagattttt 33338256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 567 - 682
Target Start/End: Original strand, 28229361 - 28229477
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctca 665  Q
    ||||||||| ||||||||||| ||| |||||||||  | | ||||  ||| ||| ||||||| ||||||||||||| || ||||||||||||||||||||    
T  28229361 gttgagatcctctccatttattaaaataaatggagtgtgcaattaggaaagatatagacacaaaaaataggtggtgagtcctatcattaaatgagtctca 28229460  T
Q  666 ccatcattaattatttt 682  Q
    |||||||||||| ||||    
T  28229461 ccatcattaattttttt 28229477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 842 - 892
Target Start/End: Complemental strand, 48950379 - 48950329
Alignment:
Q  842 tgtaaccctccctttacctatctcaataaatctgtcttcttttcggatgtg 892  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950379 tgtaaccctccctttacctatctcaataaatctgtcttcttttcggatgtg 48950329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 575 - 695
Target Start/End: Complemental strand, 33980041 - 33979921
Alignment:
Q  575 ctctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcatta 674  Q
    ||||| |||||| ||| |||||||||||||| ||||  ||| | | ||||||| ||||||  |||||  | |||||||||||| |||||||| |||||||    
T  33980041 ctctcgatttattaaaataaatggagattacaattagaaaagagatagacacaaaaaataaatggtgaatcctatcattaaataagtctcactatcatta 33979942  T
Q  675 attattttcaagattttttgt 695  Q
    |||||||| ||||||| ||||    
T  33979941 attatttttaagatttattgt 33979921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 633 - 692
Target Start/End: Complemental strand, 32577570 - 32577511
Alignment:
Q  633 taggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttt 692  Q
    |||||||||||| ||||||||||||||||  |||||||||||||| ||||||||||||||    
T  32577570 taggtggtgggtcctatcattaaatgagttccaccatcattaatttttttcaagattttt 32577511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 654
Target Start/End: Original strand, 43624333 - 43624423
Alignment:
Q  565 gagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcatta 654  Q
    ||||||||||| |||| |||||||||| ||||||||||||  |||||| ||| | | ||||||| |||||||||  | |||||||||||||    
T  43624333 gagttgagatcctctctatttataaaaataaatggagattgtcattataaaagagatagacacacaaaataggttttaggttctatcatta 43624423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 44112030 - 44112084
Alignment:
Q  213 caaaagaagtttttcaaagttaaaattattgaaaaattatttgaggccgtcaatg 267  Q
    ||||||||||||||| |||||||||||||||||||| || |||||  ||||||||    
T  44112030 caaaagaagtttttcgaagttaaaattattgaaaaactacttgagatcgtcaatg 44112084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 48050687 - 48050724
Alignment:
Q  213 caaaagaagtttttcaaagttaaaattattgaaaaatt 250  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  48050687 caaaagaagtttttcgaagttaaaattattgaaaaatt 48050724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 49679284 - 49679345
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| |||| |||| |||||| |||||| ||| |||||||||||||||||||    
T  49679284 agacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 49679345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 625 - 678
Target Start/End: Complemental strand, 54911711 - 54911658
Alignment:
Q  625 acataaaataggtggtgggttctatcattaaatgagtctcaccatcattaatta 678  Q
    ||||||||||||| |||||| ||| ||||||||||||  |||||||||||||||    
T  54911711 acataaaataggtagtgggtcctaccattaaatgagttccaccatcattaatta 54911658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 613
Target Start/End: Original strand, 778853 - 778900
Alignment:
Q  567 gttgagatct-ctccatttataaaattaaatggagattaccattatta 613  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  778853 gttgagatcttctccatttataaaaataaatggagattaccataatta 778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 698
Target Start/End: Complemental strand, 20485818 - 20485743
Alignment:
Q  623 acacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||||||||| ||||||||||  | |||||||||  || |||| |||||||||||||||| |||  |||||||||    
T  20485818 acacataaaatgggtggtgggtcgtgtcattaaataggtttcactatcattaattattttctagaacttttgtgtc 20485743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 679
Target Start/End: Original strand, 19830445 - 19830503
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||| ||||||| |||||||| ||| |||||| || ||| ||||||||||||||||    
T  19830445 agacacaaaaaatagatggtgggtcctaccattaagtgggtcccaccatcattaattat 19830503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 25285851 - 25285912
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||||||||||| | |||| | ||||||||||||||| | ||||||||| |||| ||||    
T  25285851 agacacataaaatagatagtggatcctatcattaaatgagacccaccatcatcaattttttt 25285912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 31523682 - 31523743
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| |||| | ||| || ||| |||||||||||||||||||    
T  31523682 agacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 31523743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Complemental strand, 42613133 - 42613080
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||| ||||||||| |||||| ||| || ||| |||||||||||||||||||    
T  42613133 aaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttt 42613080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 7e-30; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 567 - 685
Target Start/End: Complemental strand, 9465859 - 9465740
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctca 665  Q
    ||||||||| ||| ||||||||||| |||||||||||| ||||||| ||| | | |||||||||||||||||||||| | |||||||||||||| | |||    
T  9465859 gttgagatcctcttcatttataaaaataaatggagattgccattatgaaagagatagacacataaaataggtggtggatcctatcattaaatgaatttca 9465760  T
Q  666 ccatcattaattattttcaa 685  Q
    ||||||||||||||||||||    
T  9465759 ccatcattaattattttcaa 9465740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 565 - 698
Target Start/End: Complemental strand, 43222244 - 43222110
Alignment:
Q  565 gagttgagat-ctctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtct 663  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||| ||| | | ||||||| ||||||| ||||||||  ||||||||||||  ||     
T  43222244 gagttgagatactctccatttataaaaataaatggagattgtcattatgaaagagatagacacaaaaaatagatggtgggtcttatcattaaatggatcc 43222145  T
Q  664 caccatcattaattattttcaagattttttgtgtc 698  Q
    |||||||||||||||||||||| ||||| ||||||    
T  43222144 caccatcattaattattttcaaaattttatgtgtc 43222110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 567 - 682
Target Start/End: Complemental strand, 35650434 - 35650318
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctca 665  Q
    ||||||||| ||||||||||| ||| |||||||||||| | ||||  ||| | | ||||||| |||||||||||||||| |||| ||||||||| | |||    
T  35650434 gttgagatcctctccatttattaaaataaatggagattgcaattagaaaaaagatagacacaaaaaataggtggtgggtcctattattaaatgaatttca 35650335  T
Q  666 ccatcattaattatttt 682  Q
    |||||||||||||||||    
T  35650334 ccatcattaattatttt 35650318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 567 - 696
Target Start/End: Complemental strand, 3440956 - 3440823
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaata---ggtggtgggttctatcattaaatgagtc 662  Q
    ||||||||| ||||||||||| ||| |||||||||||||| ||||  ||| | | ||||||| ||||||   | |||| ||| |||||||||||| ||||    
T  3440956 gttgagatcctctccatttattaaaataaatggagattacaattaggaaagagatagacacaaaaaatactagatggtaggtcctatcattaaataagtc 3440857  T
Q  663 tcaccatcattaattattttcaagattttttgtg 696  Q
    |||  |||||||||||||||||||||||||||||    
T  3440856 tcattatcattaattattttcaagattttttgtg 3440823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 629 - 698
Target Start/End: Original strand, 2582379 - 2582448
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    |||||||||||||||| |||||||||||| | ||||| |||||||||||||||| |||||||||||||||    
T  2582379 aaaataggtggtgggtcctatcattaaataaatctcatcatcattaattatttttaagattttttgtgtc 2582448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 629 - 698
Target Start/End: Original strand, 9124948 - 9125017
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    |||||||||||||| | |||| ||||||| |||||||| |||||||||||||||||| || |||||||||    
T  9124948 aaaataggtggtggatcctataattaaataagtctcacaatcattaattattttcaatatattttgtgtc 9125017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 3495373 - 3495329
Alignment:
Q  213 caaaagaagtttttcaaagttaaaattattgaaaaattatttgag 257  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  3495373 caaaagaagtttttcgaagttaaaattattgaaaaattatttgag 3495329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 563 - 681
Target Start/End: Complemental strand, 14733674 - 14733556
Alignment:
Q  563 atgagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagt 661  Q
    ||||||||||||| ||||||||||||||| |||||| |||||  |||||  ||| | | ||||||| |||||| | |||||||  ||| |||||||||||    
T  14733674 atgagttgagatcctctccatttataaaaataaatgaagattgtcattaggaaagagatagacaca-aaaataagcggtgggtcttattattaaatgagt 14733576  T
Q  662 ctcaccatcattaattattt 681  Q
    | ||||||| ||||||||||    
T  14733575 cccaccatcgttaattattt 14733556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 621 - 687
Target Start/End: Complemental strand, 38283838 - 38283772
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaaga 687  Q
    ||||||||||| ||||||||||||  ||||||||||| ||||| || ||||||||||||||| ||||    
T  38283838 agacacataaagtaggtggtgggtcatatcattaaataagtctgactatcattaattatttttaaga 38283772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 698
Target Start/End: Original strand, 23253766 - 23253843
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||||||||||| ||||||||||  | |||||||||  || |||| ||||||||||||||||||||  |||||||||    
T  23253766 agacacataaaatgggtggtgggtcatgtcattaaataggtttcactatcattaattattttcaagaacttttgtgtc 23253843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 2984404 - 2984465
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||||||||||| ||| ||  | |||||| |||||| ||| |||||||||||||||||||    
T  2984404 agacacataaaataagtgatgaatcctatcactaaatgggtcccaccatcattaattatttt 2984465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Complemental strand, 17247459 - 17247406
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||||||||||||||||||||||| || ||  || ||| ||||||||||||    
T  17247459 aaaataggtggtgggttctatcattaagtgcgttccatcataattaattatttt 17247406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 18653422 - 18653361
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| ||||||| | ||| |||||| |||||| ||||||||||||| | ||||||||||    
T  18653422 agacacaaaaaatagatagtgagttctaccattaagtgagtctcaccattaataattatttt 18653361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 678
Target Start/End: Complemental strand, 31156607 - 31156551
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaatta 678  Q
    ||||||| |||||| ||||||| | |||||||||| |||||||||| |||||||||||    
T  31156607 agacacaaaaaataagtggtggat-ctatcattaagtgagtctcactatcattaatta 31156551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 36290663 - 36290602
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| |||||| ||| ||  || |||||||||||||||||||    
T  36290663 agacacaaaaaataagtggtgggtcctatcactaagtggatcccaccatcattaattatttt 36290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 563 - 698
Target Start/End: Original strand, 41072904 - 41073040
Alignment:
Q  563 atgagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagt 661  Q
    ||||||||||||| |||| | ||||||||||||||| ||| | || |||| ||| ||| ||||| ||||||||| |||||||| |||||||||||||  |    
T  41072904 atgagttgagatcctctctaattataaaattaaatgaagactgcctttataaaagatatagacatataaaatagttggtgggtcctatcattaaatggat 41073003  T
Q  662 ctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  41073004 ctcacaatcattaattatttttaagattttttgtgtc 41073040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 567 - 695
Target Start/End: Original strand, 373123 - 373252
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctca 665  Q
    ||||||||| ||||||||||||||| |||||||||||| | ||||| ||| | | ||||||| ||||||||||||||||  ||| ||||||||| || ||    
T  373123 gttgagatcctctccatttataaaaataaatggagattgcaattatgaaaaagatagacacaaaaaataggtggtgggtcatattattaaatgaatccca 373222  T
Q  666 ccatcattaattattttcaagattttttgt 695  Q
    |||| |||||||||||| ||||||||||||    
T  373223 ccattattaattatttttaagattttttgt 373252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 611
Target Start/End: Original strand, 28716264 - 28716310
Alignment:
Q  565 gagttgagatctctccatttataaaattaaatggagattaccattat 611  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  28716264 gagttgagatctctccatttattaaaataaatggagattatcattat 28716310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 23459860 - 23459921
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| |||| |||| |||||| |||||| ||| |||||||||||||||||||    
T  23459860 agacacaaaaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 23459921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 375054 - 374993
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| |||| | ||| || ||| |||||||||||||||||||    
T  375054 agacacaaaaaataagtggtgggtcctattactaagtgggtcccaccatcattaattatttt 374993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Complemental strand, 30840933 - 30840881
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||| ||||||||| |||||| ||| ||||||||||||| ||||||||||||    
T  30840933 aaaataagtggtgggtcctatcactaagtgagtctcaccat-attaattatttt 30840881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 565 - 697
Target Start/End: Original strand, 675979 - 676112
Alignment:
Q  565 gagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtct 663  Q
    ||||||||||| |||| |||||||||| ||||||  ||||  ||||||  || | | | ||||| |||||| ||||||  | ||||||||||||||||||    
T  675979 gagttgagatcctctctatttataaaaataaatgacgattgtcattatgtaagagataaacacaaaaaatatgtggtgattcctatcattaaatgagtct 676078  T
Q  664 caccatcattaattattttcaagattttttgtgt 697  Q
    ||||||||||||||||||||||||||||||||||    
T  676079 caccatcattaattattttcaagattttttgtgt 676112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 567 - 698
Target Start/End: Original strand, 27386897 - 27387029
Alignment:
Q  567 gttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctca 665  Q
    ||||||||| ||||||||||||||| ||||||||||||   ||||| ||| | | ||||||| |||||| | |||| || ||||||||||||||||   |    
T  27386897 gttgagatcctctccatttataaaaataaatggagattgttattatgaaagagatagacacaaaaaataagcggtgtgtcctatcattaaatgagttcta 27386996  T
Q  666 ccatcattaattattttcaagattttttgtgtc 698  Q
    |||  ||||||||||||||||||||||||||||    
T  27386997 ccactattaattattttcaagattttttgtgtc 27387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 636 - 693
Target Start/End: Original strand, 18118529 - 18118586
Alignment:
Q  636 gtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagatttttt 693  Q
    ||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18118529 gtggtggatcctatcattaaatgagtcacaccatcattaattattttcaagatttttt 18118586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 563 - 698
Target Start/End: Complemental strand, 20400168 - 20400036
Alignment:
Q  563 atgagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagt 661  Q
    ||||||||||||| |||||||||||| || |||||    |||  |||||| ||| | | |||||||  ||||  |||||||||  |||||||||||||||    
T  20400168 atgagttgagatcctctccatttatataaataaat----attttcattatgaaagagatagacacaacaaattagtggtgggtcttatcattaaatgagt 20400073  T
Q  662 ctcaccatcattaattattttcaagattttttgtgtc 698  Q
    | ||| ||||||||||||||| |||||||||| ||||    
T  20400072 cacacgatcattaattatttttaagattttttatgtc 20400036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 565 - 655
Target Start/End: Original strand, 31322032 - 31322123
Alignment:
Q  565 gagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaa 655  Q
    ||||||||||| ||||||||||||||| |||||| |||||  |||||| ||| ||| ||||||| ||| ||  |||||||||| ||||||||    
T  31322032 gagttgagatcctctccatttataaaaataaatgaagattgtcattatgaaaaatacagacacaaaaattatatggtgggttccatcattaa 31322123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 26826053 - 26826114
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||| |||||||  || |||||| |||||||||||||||| | ||||||||||||||||||    
T  26826053 agacatataaaattagtagtgggtcctatcattaaatgagtttaaccatcattaattatttt 26826114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 698
Target Start/End: Original strand, 30760293 - 30760344
Alignment:
Q  647 tatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||||| |||||||  ||||||||||||||||||| |||||||||| ||||    
T  30760293 tatcattgaatgagttgcaccatcattaattatttttaagattttttatgtc 30760344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 18198317 - 18198259
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||| ||||||| |||||||||||  || ||| |||||| ||||||||||||||||    
T  18198317 agacacaaaaaatagatggtgggttctgccactaagtgagtcccaccatcattaattat 18198259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 1193711 - 1193772
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||||||||||| |  | ||||||||||||||| ||||  ||||||||||||    
T  1193711 agacacaaaaaataggtggtggctcatgtcattaaatgagtctaaccacgattaattatttt 1193772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 44680253 - 44680326
Alignment:
Q  215 aaagaagtttttcaaagttaaaattattgaaaaattatttgaggccgtcaatgggacaataaaagtttgatgat 288  Q
    ||||||||||||| |||||||||||||| ||||| ||||| |   ||||||||  |||| ||||||| ||||||    
T  44680253 aaagaagtttttcgaagttaaaattattcaaaaactatttaatatcgtcaatgtcacaaaaaaagttggatgat 44680326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 47799914 - 47799975
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||| ||||| |||||| ||| || ||| |||||||||||||||||||    
T  47799914 agacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 47799975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 565 - 698
Target Start/End: Original strand, 24413243 - 24413373
Alignment:
Q  565 gagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtct 663  Q
    ||||||||||| ||||||||||||||| |||||| | |||  |||||| | |||    |||||| ||||| | |||||||| ||||||||||||| |||     
T  24413243 gagttgagatcctctccatttataaaaataaatgtatattgtcattatgagata----gacacaaaaaatggatggtgggtcctatcattaaatgggtcc 24413338  T
Q  664 caccatcattaattattttcaagattttttgtgtc 698  Q
    |||||||||||||||||||||||||||||||||||    
T  24413339 caccatcattaattattttcaagattttttgtgtc 24413373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 630 - 682
Target Start/End: Complemental strand, 26768947 - 26768895
Alignment:
Q  630 aaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26768947 aaataagtggtgggttctatcattaagtgagtctcaccatcattaattatttt 26768895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 30077658 - 30077719
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| |||||||||||||||| ||| |||||| ||| |||||||||||||||    
T  30077658 agacacaaaaaataagtggtgggttctatcactaagtgagtcccactatcattaattatttt 30077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 36700851 - 36700912
Alignment:
Q  637 tggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    |||||| ||||||||||||||   | ||||||||||||||||||||||| ||||||||||||    
T  36700851 tggtggattctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtc 36700912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 36716955 - 36717016
Alignment:
Q  637 tggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    |||||| ||||||||||||||   | ||||||||||||||||||||||| ||||||||||||    
T  36716955 tggtggattctatcattaaatagatttcaccatcattaattattttcaaaattttttgtgtc 36717016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 679
Target Start/End: Original strand, 12380922 - 12380982
Alignment:
Q  619 aaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||||| ||||||| |||||||||||| || ||| |||||| ||||||||||||||||    
T  12380922 aaagacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12380982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 679
Target Start/End: Original strand, 12384989 - 12385049
Alignment:
Q  619 aaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||||| ||||||| |||||||||||| || ||| |||||| ||||||||||||||||    
T  12384989 aaagacacaaaaaatagatggtgggttctaccactaagtgagtcccaccatcattaattat 12385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 697
Target Start/End: Original strand, 1358406 - 1358481
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgt 697  Q
    ||||||| ||||||||| |||  | |||||||  ||| ||||||||||||||||||||| || ||||||||||||||    
T  1358406 agacacaaaaaataggttgtga-tcctatcatcgaataagtctcaccatcattaattatatttaagattttttgtgt 1358481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 685
Target Start/End: Original strand, 32887794 - 32887858
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaa 685  Q
    ||||||||||||||  | |||| | ||| ||||||||| ||| ||||||||||||||||||||||    
T  32887794 agacacataaaataaatagtggatcctaccattaaatgggtcccaccatcattaattattttcaa 32887858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 693
Target Start/End: Original strand, 49943991 - 49944054
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagatttttt 693  Q
    ||||||| || ||||| |||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  49943991 aaaatagatgatgggtcctattattaaatgagtcctaccatcattaattatttt-aagatttttt 49944054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 580 - 685
Target Start/End: Complemental strand, 15901553 - 15901448
Alignment:
Q  580 catttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||| ||| |||||||||||| ||||||| ||| | | ||| ||| ||||||||| |||||| |||| |||||||| |||| || ||||||||||||    
T  15901553 catttattaaaataaatggagattgccattatgaaagagatagatacaaaaaataggtcgtgggtcctattattaaatgggtcttactatcattaattat 15901454  T
Q  680 tttcaa 685  Q
    ||||||    
T  15901453 tttcaa 15901448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 565 - 682
Target Start/End: Complemental strand, 16314071 - 16313954
Alignment:
Q  565 gagttgagatctctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctc 664  Q
    ||||| |||||||||||||||| ||| ||||||||||||  |||||| ||| | | ||| ||| ||||||||| |||||| |||| |||||||| | ||     
T  16314071 gagttaagatctctccatttattaaaataaatggagattgtcattatgaaagagatagatacaaaaaataggttgtgggtcctattattaaatggggctt 16313972  T
Q  665 accatcattaattatttt 682  Q
    || |||||||||||||||    
T  16313971 actatcattaattatttt 16313954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 615 - 698
Target Start/End: Complemental strand, 24557499 - 24557416
Alignment:
Q  615 atataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||| || ||||||||||||||| |||||  |||||||||||  |||| || |||||||||||||||||||| ||||||||||    
T  24557499 atatataggcacataaaataggtgatgggtcatatcattaaatacgtctgactatcattaattattttcaagaatttttgtgtc 24557416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 564 - 692
Target Start/End: Complemental strand, 21492894 - 21492764
Alignment:
Q  564 tgagttgagatctctc-catttataaaattaaatggagattaccattattaaatataaagacacataaaa-taggtggtgggttctatcattaaatgagt 661  Q
    ||||||||||||| |  ||||||||||| |||||||||||| ||||||  ||| | | ||||||| |||| |||||||||  | |||| |||||||  ||    
T  21492894 tgagttgagatctttttcatttataaaaataaatggagattgccattaggaaagagatagacacaaaaaaataggtggtgaatactattattaaataggt 21492795  T
Q  662 ctcaccatcattaattattttcaagattttt 692  Q
    | ||||||||||| |||||||||||||||||    
T  21492794 cccaccatcattacttattttcaagattttt 21492764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 34612625 - 34612564
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| |||||| ||| || |||||||||||||||||||||||    
T  34612625 agacacaaaaaataagtggtgggtcctatcactaagtgggtctcaccatcattaattatttt 34612564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 693
Target Start/End: Complemental strand, 42048585 - 42048521
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagatttttt 693  Q
    |||| |||||||||||||||| |||||||| |||  |||||| ||||||||||||| ||||||||    
T  42048585 aaaaaaggtggtgggttctattattaaatgggtcctaccatcgttaattattttcatgatttttt 42048521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 653 - 692
Target Start/End: Complemental strand, 13035174 - 13035135
Alignment:
Q  653 taaatgagtctcaccatcattaattattttcaagattttt 692  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  13035174 taaatgaatctcaccatcattaattattttcaagattttt 13035135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 1809876 - 1809811
Alignment:
Q  633 taggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgtc 698  Q
    ||||||||| || ||||||||||||| ||  ||||||||||||||||||||||  || ||||||||    
T  1809876 taggtggtgagtgctatcattaaatgggttccaccatcattaattattttcaatgttctttgtgtc 1809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 575 - 609
Target Start/End: Original strand, 11452964 - 11452998
Alignment:
Q  575 ctctccatttataaaattaaatggagattaccatt 609  Q
    |||||||||||||||| ||||||||||||||||||    
T  11452964 ctctccatttataaaaataaatggagattaccatt 11452998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 26749562 - 26749623
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||| ||||| |||||| ||| || ||| |||||||||||||||||||    
T  26749562 agacacaaaaaataagtgatgggtcctatcactaagtgggtcccaccatcattaattatttt 26749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 632 - 694
Target Start/End: Original strand, 2614455 - 2614517
Alignment:
Q  632 ataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttg 694  Q
    ||||||||| | |||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  2614455 ataggtggttgattctgtcattaaatgagtcacaccatcattaattatttttaagattttttg 2614517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 635 - 685
Target Start/End: Complemental strand, 27096051 - 27096001
Alignment:
Q  635 ggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaa 685  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27096051 ggtgatgggtcctatcattaaatgagtctcaccatcattaattattttcaa 27096001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 682
Target Start/End: Original strand, 2165525 - 2165563
Alignment:
Q  644 ttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  2165525 ttctatcattaaatgagtctcactatcattaattatttt 2165563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 682
Target Start/End: Original strand, 2177158 - 2177196
Alignment:
Q  644 ttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  2177158 ttctatcattaaatgagtctcactatcattaattatttt 2177196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 621 - 682
Target Start/End: Complemental strand, 24484940 - 24484879
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| |||||| ||| || ||| |||||||||||||||||||    
T  24484940 agacacaaaaaataagtggtgggtcctatcactaagtgggtcccaccatcattaattatttt 24484879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 629 - 682
Target Start/End: Original strand, 32254053 - 32254106
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||| ||||||||||| |||||||||| |||||| ||| |||||||||||||||    
T  32254053 aaaaaaggtggtgggtcctatcattaagtgagtcccactatcattaattatttt 32254106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 693
Target Start/End: Complemental strand, 1514859 - 1514730
Alignment:
Q  565 gagttgagatc-tctccatttataaaattaaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtct 663  Q
    ||||||||||| |||| |||||||||| ||||||||||||   ||||| ||  | | |||||||  ||||| ||| || ||| ||| ||||||||| |      
T  1514859 gagttgagatcatctctatttataaaaataaatggagattgtaattatgaacgaaatagacacaataaatatgtgatgagttttattattaaatgaattc 1514760  T
Q  664 caccatcattaattattttcaagatttttt 693  Q
    ||| || ||||||||||||||| |||||||    
T  1514759 cactatgattaattattttcaaaatttttt 1514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 682
Target Start/End: Original strand, 17269212 - 17269245
Alignment:
Q  649 tcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||||||||||||||| |||||||||||||||    
T  17269212 tcattaaatgagtctcactatcattaattatttt 17269245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 56453834 - 56453895
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||||||||||||| |||||||||| || ||| |||||||||| ||||||||    
T  56453834 agacacaaaaaataggtggtgggtcctatcattaagtgggtcccaccatcattcattatttt 56453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 697
Target Start/End: Complemental strand, 54588950 - 54588845
Alignment:
Q  592 taaatggagattaccattattaaatataaagacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagatttt 691  Q
    |||||| ||||| | ||||| ||| | ||||||||||||||||| | ||| |||  || ||||||| |||   |||||||||||||||||  ||||||||    
T  54588950 taaatgaagattgcaattatgaaagagaaagacacataaaatagattgtgagttacattattaaataagttctaccatcattaattatttataagatttt 54588851  T
Q  692 ttgtgt 697  Q
    ||||||    
T  54588850 ttgtgt 54588845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 35850148 - 35850096
Alignment:
Q  215 aaagaagtttttcaaagttaaaattattgaaaaattatttgaggccgtcaatg 267  Q
    |||||||||||| |||||||||||| ||||||||||| |||||  ||||||||    
T  35850148 aaagaagtttttaaaagttaaaattgttgaaaaattacttgagatcgtcaatg 35850096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 9277258 - 9277316
Alignment:
Q  302 atatgatagagcatattaatatagacacaattattagtgactctgcatatacaaatgct 360  Q
    ||||||||||  |||||||| || |||||||||||||||| | |||||||| |||||||    
T  9277258 atatgatagaaaatattaatgtaaacacaattattagtgaatttgcatataaaaatgct 9277316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 691
Target Start/End: Complemental strand, 38865338 - 38865268
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagatttt 691  Q
    ||||||| |||||| ||||| ||| ||| ||||||||  ||  || |||||||||||||||||||||||||    
T  38865338 agacacaaaaaatatgtggtaggtcctaccattaaataggttccagcatcattaattattttcaagatttt 38865268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 39862578 - 39862520
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||| ||||||| ||||| || |||||| |||||||||  ||||||||||||||||    
T  39862578 agacacaaaaaatagatggtgtgtcctatcactaaatgagttccaccatcattaattat 39862520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 679
Target Start/End: Complemental strand, 56558340 - 56558282
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattat 679  Q
    ||||||| ||||||| |||||||| |||||| ||| || ||| ||||||||||||||||    
T  56558340 agacacaaaaaatagatggtgggtcctatcactaagtgggtcccaccatcattaattat 56558282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 1015868 - 1015929
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| | |||||||  || ||| |||||||||||||||||||    
T  1015868 agacacaaaaaataagtggtgggtcccatcattaggtgggtcccaccatcattaattatttt 1015929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 697
Target Start/End: Original strand, 3512353 - 3512414
Alignment:
Q  636 gtggtgggttctatcattaaatgagtctcaccatcattaattattttcaagattttttgtgt 697  Q
    |||||| ||||||||||||||||| |  |||||| |||||||||||| ||  ||||||||||    
T  3512353 gtggtgtgttctatcattaaatgaattccaccattattaattatttttaaatttttttgtgt 3512414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Complemental strand, 5524500 - 5524447
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||| ||||||||| |||||| ||| || ||| |||||||||||||||||||    
T  5524500 aaaataagtggtgggtcctatcagtaagtgggtcccaccatcattaattatttt 5524447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 17621975 - 17621942
Alignment:
Q  215 aaagaagtttttcaaagttaaaattattgaaaaa 248  Q
    ||||||||||||| ||||||||||||||||||||    
T  17621975 aaagaagtttttcgaagttaaaattattgaaaaa 17621942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 682
Target Start/End: Complemental strand, 42010170 - 42010117
Alignment:
Q  629 aaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    |||||| |||| |||| |||||| |||||| ||| |||||||||||||||||||    
T  42010170 aaaataagtggcgggtcctatcactaaatgggtcccaccatcattaattatttt 42010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 56269090 - 56269151
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||||||||| ||| || ||| || ||| |||||||||||||||||||    
T  56269090 agacacaaaaaataagtggtgggtcctaccactaagtgggtcccaccatcattaattatttt 56269151  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 25805 - 25758
Alignment:
Q  215 aaagaagtttttcaaagttaaaattattgaaaaattatttgaggccgt 262  Q
    ||||||||||||| |||||||||||||||||||||| |||||| ||||    
T  25805 aaagaagtttttcgaagttaaaattattgaaaaattgtttgagaccgt 25758  T

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Target: scaffold0286 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 682
Target Start/End: Complemental strand, 16884 - 16846
Alignment:
Q  644 ttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  16884 ttctatcattaaatgagtctcactatcattaattatttt 16846  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 682
Target Start/End: Original strand, 17320 - 17381
Alignment:
Q  621 agacacataaaataggtggtgggttctatcattaaatgagtctcaccatcattaattatttt 682  Q
    ||||||| |||||| ||| ||||| |||||| ||| || ||| |||||||||||||||||||    
T  17320 agacacaaaaaataagtgctgggtcctatcactaagtgggtcccaccatcattaattatttt 17381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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