View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6934_low_10 (Length: 254)

Name: NF6934_low_10
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6934_low_10
NF6934_low_10
[»] scaffold0163 (2 HSPs)
scaffold0163 (85-240)||(20442-20599)
scaffold0163 (1-80)||(20268-20347)
[»] chr3 (7 HSPs)
chr3 (85-240)||(2159792-2159949)
chr3 (85-240)||(40088948-40089105)
chr3 (1-80)||(40089200-40089279)
chr3 (1-80)||(2159618-2159697)
chr3 (1-80)||(8977630-8977709)
chr3 (1-80)||(9541920-9541999)
chr3 (93-197)||(28356908-28357014)
[»] chr1 (2 HSPs)
chr1 (85-198)||(20175887-20176002)
chr1 (1-80)||(20175713-20175792)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-84)||(30667-30750)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-84)||(84062-84145)
[»] chr5 (6 HSPs)
chr5 (1-80)||(27416915-27416994)
chr5 (1-80)||(18384524-18384603)
chr5 (93-197)||(24417151-24417257)
chr5 (1-80)||(26197803-26197882)
chr5 (1-80)||(33944104-33944183)
chr5 (8-80)||(19381287-19381359)
[»] chr8 (3 HSPs)
chr8 (1-80)||(14887167-14887246)
chr8 (1-80)||(21208448-21208527)
chr8 (1-79)||(22835523-22835601)
[»] chr7 (9 HSPs)
chr7 (1-80)||(5387393-5387472)
chr7 (1-80)||(9540718-9540797)
chr7 (1-80)||(6539261-6539340)
chr7 (1-80)||(8505833-8505912)
chr7 (1-80)||(16137662-16137741)
chr7 (17-80)||(18663685-18663748)
chr7 (1-80)||(26353777-26353856)
chr7 (1-80)||(44902141-44902220)
chr7 (1-80)||(46501898-46501977)
[»] chr2 (5 HSPs)
chr2 (1-80)||(22103298-22103376)
chr2 (26-80)||(22906954-22907008)
chr2 (1-77)||(45019134-45019210)
chr2 (1-80)||(9509242-9509321)
chr2 (1-80)||(18656002-18656081)
[»] scaffold0003 (1 HSPs)
scaffold0003 (27-80)||(153382-153435)
[»] scaffold0611 (1 HSPs)
scaffold0611 (1-77)||(2730-2806)
[»] chr4 (5 HSPs)
chr4 (93-198)||(54695134-54695241)
chr4 (1-80)||(6697002-6697081)
chr4 (1-72)||(16269840-16269911)
chr4 (93-197)||(26816800-26816906)
chr4 (93-163)||(17156382-17156454)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-80)||(13456-13535)
[»] scaffold0145 (1 HSPs)
scaffold0145 (1-72)||(33387-33458)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-80)||(45902-45981)
[»] scaffold0028 (1 HSPs)
scaffold0028 (93-197)||(99649-99755)
[»] chr6 (2 HSPs)
chr6 (1-80)||(16902730-16902809)
chr6 (1-80)||(31361603-31361682)


Alignment Details
Target: scaffold0163 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 20442 - 20599
Alignment:
Q  85 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacaca 182  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || |||||| |||||||||||||| ||||||||| ||| || |||    
T  20442 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacctttttactcaaaaatgattttactcgtggacatatcgataca 20541  T
Q  183 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatgttgatg 240  Q
    |||||||| ||||||| || ||| ||||| || |||||||||||||||||||||||||    
T  20542 actcttttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatgttgatg 20599  T

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Target: scaffold0163; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 20268 - 20347
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  20268 aaggttagaagcaattagaattttacttgcatatgctgcacataaacaaatcaaactttttcaaatggatgttaaaagtg 20347  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 240
Target Start/End: Original strand, 2159792 - 2159949
Alignment:
Q  85 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacaca 182  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || |||||| |||||||||||||||||||||||| ||| || |||    
T  2159792 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 2159891  T
Q  183 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatgttgatg 240  Q
    ||||| || ||||||| || ||| ||||| || |||||||||||||||||||||||||    
T  2159892 actctcttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatgttgatg 2159949  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 40089105 - 40088948
Alignment:
Q  85 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacaca 182  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || |||||| |||||||||||||||||||||||| ||| || |||    
T  40089105 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 40089006  T
Q  183 actctttttagaaaaattcataatcaagatctcttaattgttcaagtctatgttgatg 240  Q
    ||||| || ||||||| || ||| ||||| || |||||||||||||||||||||||||    
T  40089005 actctcttcagaaaaagtcttaaccaagaccttttaattgttcaagtctatgttgatg 40088948  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 40089279 - 40089200
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  40089279 aaggttagaagcaattagaattttacttgcttatgctgcacataaacaaatcaaactttttcaaatggatgttaaaagtg 40089200  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 2159618 - 2159697
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| ||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  2159618 aaggttagaagctattagaattttgcttgcatatgctgcacataaacaaatcaaactttttcaaatggacgttaaaagtg 2159697  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8977630 - 8977709
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  8977630 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 8977709  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 9541920 - 9541999
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  9541920 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 9541999  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 28357014 - 28356908
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacacaactctttt 190  Q
    |||||||||| |||||||||| | || ||||||||  |||  | ||||| || ||||||||||||||||||||| | |||   ||||| ||||| |||||    
T  28357014 tatatggtcttaaacaagctcctcgagcttggtatgaaaggttaagcacgttcttaatcaaaaatgatttttctagaggaaaaattgatacaaccctttt 28356915  T
Q  191 tagaaaa 197  Q
    |||||||    
T  28356914 tagaaaa 28356908  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 20175887 - 20176002
Alignment:
Q  85 aaaagccttatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacaca 182  Q
    ||||||||||||||||||||||||||||| | || ||||||||  |||||| || || |||||| |||||||||||||||||||||||| ||| || |||    
T  20175887 aaaagccttatatggtctcaaacaagctcctcgagcttggtatgaaagactaagtacttttttactcaaaaatgatttttctcgtggacatatcgataca 20175986  T
Q  183 actctttttagaaaaa 198  Q
    ||||| || |||||||    
T  20175987 actctcttcagaaaaa 20176002  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 20175713 - 20175792
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| ||||||||||    
T  20175713 aaggttagaagcaattagaattttgcttgcatatgctgcacataaacaaatcaaactttttcaaatggacgttaaaagtg 20175792  T

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Target: scaffold0141 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 30667 - 30750
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtgtttt 84  Q
    |||||| ||||| ||||||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||||||    
T  30667 aaggttagaagccattagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtgtttt 30750  T

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Target: scaffold0049 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 84145 - 84062
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtgtttt 84  Q
    |||||| ||||| ||||||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||||||    
T  84145 aaggttagaagccattagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtgtttt 84062  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 27416915 - 27416994
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||||||||||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  27416915 aaggttagaagcaattagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 27416994  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18384524 - 18384603
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  18384524 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 18384603  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 24417151 - 24417257
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacacaactctttt 190  Q
    |||||||||| |||||||||| | || ||||||||  |||  | || ||||| ||||||||||||||||||||| | |||   ||||| ||||| |||||    
T  24417151 tatatggtcttaaacaagctcctcgagcttggtatgaaaggttaagtacattcttaatcaaaaatgatttttctagaggaaaaattgatacaaccctttt 24417250  T
Q  191 tagaaaa 197  Q
    |||||||    
T  24417251 tagaaaa 24417257  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26197882 - 26197803
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  26197882 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 26197803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33944104 - 33944183
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  33944104 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 33944183  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 19381359 - 19381287
Alignment:
Q  8 gaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    ||||| || |||||| | || |||||||||||||| |||  ||| ||| |||||||||||||||| |||||||    
T  19381359 gaagccatcagaattcttctagcatatgttgcacataaaagcattaaaatttttcaaatggatgtgaaaagtg 19381287  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14887246 - 14887167
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  14887246 aaggttagaagccatcagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 14887167  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 21208527 - 21208448
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  21208527 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 21208448  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 22835523 - 22835601
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagt 79  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| ||||| |||||||||||||| ||||||    
T  22835523 aaggttagaagccatcagaattcttcttgcatatgctgcacataaaagcattaaactctttcaaatggatgtgaaaagt 22835601  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 5387472 - 5387393
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| ||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  5387472 aaggttagaagccatcagaattcttcttgcttatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 5387393  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9540797 - 9540718
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  9540797 aaggttagaagccatcagaattcttcttgcatatgatgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 9540718  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6539261 - 6539340
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  6539261 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 6539340  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8505833 - 8505912
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  8505833 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 8505912  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 16137741 - 16137662
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  16137741 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 16137662  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18663685 - 18663748
Alignment:
Q  17 agaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| | ||||||||| ||||||| |||  ||| |||||||||||||||||||| |||||||    
T  18663685 agaattcttcttgcatatattgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 18663748  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 26353856 - 26353777
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  26353856 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 26353777  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 44902141 - 44902220
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  44902141 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 44902220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 46501898 - 46501977
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  46501898 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 46501977  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 22103298 - 22103376
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||||||||||||| | |||| ||||| |||||| ||| |||| ||||||||| |||||||||| |||||||    
T  22103298 aaggttagaagcaattagaattctccttg-atatgatgcacataaaaacattaaacttttttaaatggatgtaaaaagtg 22103376  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 22906954 - 22907008
Alignment:
Q  26 cttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    ||||||||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  22906954 cttgcatatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 22907008  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45019134 - 45019210
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaa 77  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| ||||    
T  45019134 aaggttagaagccatcagaattattcttgcatatgctgcacataaaagcattaaactttttcaaatggatgtgaaaa 45019210  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9509321 - 9509242
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  9509321 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 9509242  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18656002 - 18656081
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  18656002 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 18656081  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 153382 - 153435
Alignment:
Q  27 ttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||||||||||||| |||  ||| |||||||||||||||||||| |||||||    
T  153382 ttgcatatgttgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 153435  T

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Target: scaffold0611 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2730 - 2806
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaa 77  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| |||||||||||||||||||| ||||    
T  2730 aaggttagaagccatcagaattcttcttgcatatgatgcacataaaagcattaaactttttcaaatggatgtgaaaa 2806  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 54695241 - 54695134
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacacaactctttt 190  Q
    |||||||||| |||||||||| | || ||||||||  |||  | || ||||| ||||||||||||||||||||| | |||   ||||| ||||| |||||    
T  54695241 tatatggtcttaaacaagctcctcgagcttggtatgaaaggttaagtacattcttaatcaaaaatgatttttctagaggaaaaattgatacaaccctttt 54695142  T
Q  191 tagaaaaa 198  Q
    ||||||||    
T  54695141 tagaaaaa 54695134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6697002 - 6697081
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  6697002 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 6697081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16269840 - 16269911
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgt 72  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| ||||||||||||||||||||    
T  16269840 aaggttagaagccatcagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgt 16269911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 26816800 - 26816906
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacacaactctttt 190  Q
    |||||||||| |||||||||| | || ||||||||  |||  | ||||| || ||||||||||||||||||||| | |||   ||||| ||||| |||||    
T  26816800 tatatggtcttaaacaagctcctcgagcttggtatgaaaggttaagcacgttcttaatcaaaaatgatttttctagaggaaaaattgatacaaccctttt 26816899  T
Q  191 tagaaaa 197  Q
    |||||||    
T  26816900 tagaaaa 26816906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 17156382 - 17156454
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtataa--gacttagcacatttttaatcaaaaatgatttttc 163  Q
    ||||||||||||||||||||| | || || ||||| |  |||||||||||||||||||  |||||| ||||||    
T  17156382 tatatggtctcaaacaagctcctagagctcggtatgatagacttagcacatttttaattgaaaatggtttttc 17156454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 13535 - 13456
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  13535 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 13456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33458 - 33387
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgt 72  Q
    |||||| ||||| || |||||| | |||||||||| |||||| |||  ||| ||||||||||||||||||||    
T  33458 aaggttagaagccatcagaattcttcttgcatatgctgcacataaaagcattaaactttttcaaatggatgt 33387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 45981 - 45902
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  45981 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 45902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 99755 - 99649
Alignment:
Q  93 tatatggtctcaaacaagctcattgatcttggtat--aagacttagcacatttttaatcaaaaatgatttttctcgtggacctattgacacaactctttt 190  Q
    |||||||||| |||||||||| | || ||||||||  |||  | ||||| || ||||||||||||||||||||| | |||   ||||| ||||| |||||    
T  99755 tatatggtcttaaacaagctcctcgagcttggtatgaaaggttaagcacgttcttaatcaaaaatgatttttctagaggaaaaattgatacaaccctttt 99656  T
Q  191 tagaaaa 197  Q
    |||||||    
T  99655 tagaaaa 99649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 16902730 - 16902809
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  16902730 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 16902809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31361603 - 31361682
Alignment:
Q  1 aaggttcgaagcaattagaattttacttgcatatgttgcacacaaacacatcaaactttttcaaatggatgttaaaagtg 80  Q
    |||||| ||||| || |||||| | ||||| |||| |||||| |||  ||| |||||||||||||||||||| |||||||    
T  31361603 aaggttagaagccatcagaattcttcttgcttatgctgcacataaaagcattaaactttttcaaatggatgtgaaaagtg 31361682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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