View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6934_low_12 (Length: 244)

Name: NF6934_low_12
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6934_low_12
NF6934_low_12
[»] chr1 (5 HSPs)
chr1 (9-126)||(15541306-15541423)
chr1 (121-220)||(1567076-1567176)
chr1 (9-80)||(13882323-13882394)
chr1 (134-220)||(15541726-15541813)
chr1 (43-92)||(1567179-1567228)
[»] chr7 (8 HSPs)
chr7 (69-220)||(37945836-37945986)
chr7 (9-80)||(37946036-37946107)
chr7 (9-79)||(4531838-4531908)
chr7 (9-80)||(16060469-16060540)
chr7 (9-80)||(9080295-9080366)
chr7 (9-80)||(48376744-48376815)
chr7 (156-206)||(4531774-4531826)
chr7 (172-220)||(13477488-13477536)
[»] chr2 (3 HSPs)
chr2 (9-220)||(32252099-32252303)
chr2 (13-121)||(16858782-16858890)
chr2 (13-80)||(23656548-23656615)
[»] chr6 (5 HSPs)
chr6 (10-121)||(8403894-8404005)
chr6 (26-147)||(10906843-10906965)
chr6 (9-80)||(14989462-14989533)
chr6 (154-220)||(9191072-9191140)
chr6 (9-80)||(14980350-14980421)
[»] chr4 (2 HSPs)
chr4 (10-121)||(15872943-15873054)
chr4 (9-120)||(12228926-12229037)
[»] scaffold0385 (1 HSPs)
scaffold0385 (15-121)||(14126-14232)
[»] chr3 (7 HSPs)
chr3 (14-121)||(16362634-16362744)
chr3 (9-80)||(13926936-13927007)
chr3 (10-121)||(22159695-22159801)
chr3 (9-80)||(16642254-16642325)
chr3 (128-199)||(13926880-13926952)
chr3 (9-80)||(4712887-4712958)
chr3 (172-220)||(14481639-14481687)
[»] chr5 (7 HSPs)
chr5 (16-123)||(13935579-13935686)
chr5 (154-220)||(13935746-13935814)
chr5 (26-220)||(24615336-24615528)
chr5 (26-220)||(24711734-24711926)
chr5 (26-220)||(24744730-24744922)
chr5 (26-220)||(24757496-24757688)
chr5 (172-220)||(24832039-24832087)
[»] chr8 (2 HSPs)
chr8 (9-79)||(23657708-23657778)
chr8 (9-79)||(23658483-23658553)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-80)||(130752-130823)
[»] scaffold0218 (1 HSPs)
scaffold0218 (9-80)||(14334-14405)
[»] scaffold0737 (1 HSPs)
scaffold0737 (9-80)||(3752-3823)
[»] scaffold0166 (1 HSPs)
scaffold0166 (66-220)||(15-167)
[»] scaffold0091 (1 HSPs)
scaffold0091 (9-80)||(29014-29085)
[»] scaffold0063 (1 HSPs)
scaffold0063 (9-76)||(28356-28423)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 15541306 - 15541423
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccat 108  Q
    ||||| |||||||||| ||||||||| | ||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  15541306 acatcttcactctcatcatcataatagtgtagttatcgtcattctcataatcactaaaatataaacattatcattctcatcttcatcataatttaaccat 15541405  T
Q  109 catcactctcatcattat 126  Q
    | ||||||||||||||||    
T  15541406 cttcactctcatcattat 15541423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 1567176 - 1567076
Alignment:
Q  121 cattatcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatata--atatcaattgtcatcactctttgtcacaattataggattc 218  Q
    |||||||  ||| |||| || ||||||||| || ||||||||||| ||||||||||||  |||||||| ||||||||||||||||||||||||| |||||    
T  1567176 cattatcgtaatataaatattgtcatttctcat-cgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattc 1567078  T
Q  219 ct 220  Q
    ||    
T  1567077 ct 1567076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 13882394 - 13882323
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  13882394 acatcattactctcatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattatc 13882323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 15541726 - 15541813
Alignment:
Q  134 taaacatcgtcatttctaattcgtatttatttatttacatatata--atatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    |||||||||||||| || ||| |||| ||||||||||| ||||||  |||||||| || ||||||  |||||||||||||| |||||||    
T  15541726 taaacatcgtcattcctcatt-gtatctatttatttacttatatacaatatcaatcgttatcacttgttgtcacaattatatgattcct 15541813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 1567228 - 1567179
Alignment:
Q  43 atcgtcattctcatcatcattaaaatataaacattatcgttctcatcttc 92  Q
    ||||||||||||||||||  ||||||| | |||||||| |||||||||||    
T  1567228 atcgtcattctcatcatcgctaaaatacagacattatcattctcatcttc 1567179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 69 - 220
Target Start/End: Complemental strand, 37945986 - 37945836
Alignment:
Q  69 ataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcattatcaaaatctaaacatcgtcatttctaattcgtatttatttatt 168  Q
    |||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||   ||| ||||||||||||||||| | |||||||||||||||    
T  37945986 ataaacattatcattctcatctttatcataatttaaccatcttcactctcatcactattgtaatataaacatcgtcatttctta-tcgtatttatttatt 37945888  T
Q  169 tacatatataatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    |||||||||||||||||   ||||||| |||||| ||| ||||| |||||||    
T  37945887 tacatatataatatcaaccatcatcacactttgttacagttatatgattcct 37945836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 37946107 - 37946036
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    |||||||||||||||| |||||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  37946107 acatcatcactctcatcatcatattagtataattatcgtcattctcatcatcactaaaatataaacattatc 37946036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 4531908 - 4531838
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattat 79  Q
    |||||||||||||||| |||||||| |||||||| ||||||| |||||||||| |||||||||| ||||||    
T  4531908 acatcatcactctcatcatcataatgatatagttgtcgtcatcctcatcatcaataaaatataagcattat 4531838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 16060469 - 16060540
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  16060469 acatcattactctcatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattatc 16060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 9080295 - 9080366
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| ||||| || |||||| | |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  9080295 acatcattactcttatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattatc 9080366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 48376744 - 48376815
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | | |||||||||||||| |||||||||| ||| ||||||||||||||    
T  48376744 acatcattactctcatcatcatactgaaatagttatcgtcatcctcatcatcaataacatataaacattatc 48376815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 4531826 - 4531774
Alignment:
Q  156 gtatttatttatttacatatata--atatcaattgtcatcactctttgtcaca 206  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  4531826 gtatttatttatttacatatatataatatcaattgtcatcactcttcgtcaca 4531774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 13477536 - 13477488
Alignment:
Q  172 atatataatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||||||||||| ||| ||||||||||||||| ||| |||||||| ||||    
T  13477536 atatataatattaatcgtcatcactctttgttacagttataggactcct 13477488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 32252303 - 32252099
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccat 108  Q
    |||||||| |||||   ||||||||| |||||||||| ||||||||||| || ||| |||||| ||||| |||| |||||| ||||   ||||||||| |    
T  32252303 acatcatctctctccccatcataatagtatagttatcatcattctcatcgtctttataatatagacattttcgtcctcatcgtcat---aatttaaccct 32252207  T
Q  109 catcactctcatcattatcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatataatatcaattgtcatcactctttgtcacaat 208  Q
    ||| |||||| |||| || | ||| ||||||| ||   |||| |  || ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32252206 cattactctcttcatcattataatataaacattgt---ttctcac-cgcatttatttattcacatatataatatcaattgtcatcactctttgtcacaat 32252111  T
Q  209 tataggattcct 220  Q
    ||||||||||||    
T  32252110 tataggattcct 32252099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 16858782 - 16858890
Alignment:
Q  13 catcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatc 112  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||| |||| ||||||||||||| | | ||||||||||||||||||| |||||||    
T  16858782 catcactctcatcattataatagtatagttatcgtcattctcatcatcactaaagtataaacattatcatccacatcttcatcataatttaatcatcatc 16858881  T
Q  113 actctcatc 121  Q
    |||||||||    
T  16858882 actctcatc 16858890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 23656615 - 23656548
Alignment:
Q  13 catcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||||||||  |||| || ||||||||| |||||| ||||| |||||||||||||||| ||||||    
T  23656615 catcactctcatcttcatcatgatatagttagcgtcatcctcattatcattaaaatataaatattatc 23656548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 8404005 - 8403894
Alignment:
Q  10 catcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatc 109  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||| | || ||||    
T  8404005 catcatcactctcatcatcataatgatatagttatcgtcatcctcatcatcactaaaatataaacattatcatcctcatcttcatcataaatcaatcatc 8403906  T
Q  110 atcactctcatc 121  Q
    | ||||||||||    
T  8403905 accactctcatc 8403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 10906965 - 10906843
Alignment:
Q  26 atcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc-gttctcatcttcatcataatttaaccatcatcactctcatcatt 124  Q
    |||||||| |||||||| ||  |||||||||||||| ||||||||||||||||||  |||||||  |||||||||||||||||||| || |||||||||     
T  10906965 atcataatgatatagttctcaacattctcatcatcactaaaatataaacattatcatttctcattatcatcataatttaaccatcaacattctcatcata 10906866  T
Q  125 atcaaaatctaaacatcgtcatt 147  Q
    || | ||| || |||||||||||    
T  10906865 atgacaatttagacatcgtcatt 10906843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14989533 - 14989462
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  14989533 acatcattactctcatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattatc 14989462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 9191072 - 9191140
Alignment:
Q  154 tcgtatttatttatttacatatata--atatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||||||||||||||| |||||||||  ||||||||  |||||||||||| ||||| |||||||||||||    
T  9191072 tcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcct 9191140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 14980421 - 14980350
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| ||| |||| |||||| | ||||||||||||||||   |||||||| ||| ||||||||||||||    
T  14980421 acatcattactatcatcatcatactgatatagttatcgtcatcaccatcatcactaacatataaacattatc 14980350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 15873054 - 15872943
Alignment:
Q  10 catcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatc 109  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | ||||| |||||||||| |||| || |    
T  15873054 catcatcactctcatcatcataatgatatagttatcgtcatcctcatcatcactaaaatataaacattatcatcctcatattcatcataaattaatcaac 15872955  T
Q  110 atcactctcatc 121  Q
     |||||||||||    
T  15872954 ttcactctcatc 15872943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 12228926 - 12229037
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccat 108  Q
    |||||||||||||||   ||||||| ||||||||  |||||| |||||||||| ||||||||||| |||||| | ||||||||||||||||||||| |||    
T  12228926 acatcatcactctcaccgtcataatgatatagttgccgtcatcctcatcatcactaaaatataaatattatcatcctcatcttcatcataatttaatcat 12229025  T
Q  109 catcactctcat 120  Q
    ||||||||||||    
T  12229026 catcactctcat 12229037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 14126 - 14232
Alignment:
Q  15 tcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcac 114  Q
    |||||||||| |||||||| |||||||||| ||||| |||||||||| |||||||||||||||||| | |||||||||||||||| |||| ||| |||||    
T  14126 tcactctcatcatcataatgatatagttattgtcatcctcatcatcactaaaatataaacattatcatcctcatcttcatcataaattaatcattatcac 14225  T
Q  115 tctcatc 121  Q
    |||||||    
T  14226 tctcatc 14232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 16362744 - 16362634
Alignment:
Q  14 atcactctcattatcataataatatagttatcgtcattctcatcatcat---taaaatataaacattatcgttctcatcttcatcataatttaaccatca 110  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||   |||||||||||||||||| | ||||| |||||||||| |||| || |     
T  16362744 atcactctcatcatcataatgatatagttatcgtcatcctcatcatcatcactaaaatataaacattatcatcctcatattcatcataaattaatcaact 16362645  T
Q  111 tcactctcatc 121  Q
    ||| |||||||    
T  16362644 tcaatctcatc 16362634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 13927007 - 13926936
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    |||||||||||||||| | |||||| |||||||| |||||||  || |||||| ||||||||||||||||||    
T  13927007 acatcatcactctcatcaccataatgatatagttgtcgtcatcttcgtcatcactaaaatataaacattatc 13926936  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 22159695 - 22159801
Alignment:
Q  10 catcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatc 109  Q
    ||||||||||||||  |||||| | |||||||||| ||||| |||||||||| |||||     | |||||| | |||||||||||||||| |||| |||     
T  22159695 catcatcactctcaacatcatattgatatagttattgtcatcctcatcatcactaaaa-----atattatcatcctcatcttcatcataaattaatcatt 22159789  T
Q  110 atcactctcatc 121  Q
    ||||||||||||    
T  22159790 atcactctcatc 22159801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 16642254 - 16642325
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| ||||| || |||||| ||||||||||||| |||| || ||||||| ||| ||||||||||||||    
T  16642254 acatcattactcttatcatcatactaatatagttatcctcatcctgatcatcactaacatataaacattatc 16642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 13926952 - 13926880
Alignment:
Q  128 aaaatctaaacatcgtcatttctaattcgtatttatttatttacatatata--atatcaattgtcatcactctt 199  Q
    ||||| |||||||  |||||||| || |||||||||||||||| |||||||  |||||||||||||||||||||    
T  13926952 aaaatataaacattatcatttctcat-cgtatttatttatttaaatatatataatatcaattgtcatcactctt 13926880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 4712958 - 4712887
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| ||| |||| |||||| | ||||||||||||||||   |||||||| ||| ||||||||||||||    
T  4712958 acatcattactatcatcatcatactgatatagttatcgtcatcaccatcatcactaacatataaacattatc 4712887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 14481687 - 14481639
Alignment:
Q  172 atatataatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||||||||||| |||  |||||||||||||||||| |||||||| ||||    
T  14481687 atatataatattaatcatcatcactctttgtcacagttataggactcct 14481639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 13935579 - 13935686
Alignment:
Q  16 cactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcact 115  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||| ||  ||||| || || |  |||||||| ||||||||||  ||||    
T  13935579 cactctcatcatcatcataatatagttatcgtcattctcaacatcagtaaaatatgaatgttatcattatctttatcatcatagtttaaccatcgacact 13935678  T
Q  116 ctcatcat 123  Q
    ||||||||    
T  13935679 ctcatcat 13935686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 13935746 - 13935814
Alignment:
Q  154 tcgtatttatttatttacata--tataatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||||||||||| |||||||||  |||| ||||||||||||||||||||||||||  |||||||||||||    
T  13935746 tcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcct 13935814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 24615336 - 24615528
Alignment:
Q  26 atcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcatta 125  Q
    ||||||||| |||||||||  ||||| ||||  ||  || |||||| |||||||| | |||||| ||||  ||||||||||||||| |||||| ||||      
T  24615336 atcataatagtatagttattttcattatcattgtctctataatatagacattatcatcctcatcatcatattaatttaaccatcattactctcctcatcg 24615435  T
Q  126 tcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatat--aatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    | | ||| ||||||| ||   |||  || |||||||||||||| ||||||||  |||||||||  ||||||||| |||||| ||||||| |||||||    
T  24615436 ttataatataaacattgt---ttcatat-cgtatttatttattcacatatatacaatatcaatcatcatcactcgttgtcaaaattatatgattcct 24615528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 24711734 - 24711926
Alignment:
Q  26 atcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcatta 125  Q
    ||||||||| |||||||||  ||||| ||||  ||  || |||||| |||||||| | |||||| ||||  ||||||||||||||| |||||| ||||      
T  24711734 atcataatagtatagttattttcattatcattgtctctataatatagacattatcatcctcatcatcatattaatttaaccatcattactctcctcatcg 24711833  T
Q  126 tcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatat--aatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    | | ||| ||||||| ||   |||  || |||||||||||||| ||||||||  |||||||||  ||||||||| |||||| ||||||| |||||||    
T  24711834 ttataatataaacattgt---ttcatat-cgtatttatttattcacatatatacaatatcaatcatcatcactcgttgtcaaaattatatgattcct 24711926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 24744730 - 24744922
Alignment:
Q  26 atcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcatta 125  Q
    ||||||||| |||||||||  ||||| ||||  ||  || |||||| |||||||| | |||||| ||||  ||||||||||||||| |||||| ||||      
T  24744730 atcataatagtatagttattttcattatcattgtctctataatatagacattatcatcctcatcatcatattaatttaaccatcattactctcctcatcg 24744829  T
Q  126 tcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatat--aatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    | | ||| ||||||| ||   |||  || |||||||||||||| ||||||||  |||||||||  ||||||||| |||||| ||||||| |||||||    
T  24744830 ttataatataaacattgt---ttcatat-cgtatttatttattcacatatatacaatatcaatcatcatcactcgttgtcaaaattatatgattcct 24744922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 24757496 - 24757688
Alignment:
Q  26 atcataataatatagttatcgtcattctcatcatcattaaaatataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcatta 125  Q
    ||||||||| |||||||||  ||||| ||||  ||  || |||||| |||||||| | |||||| ||||  ||||||||||||||| |||||| ||||      
T  24757496 atcataatagtatagttattttcattatcattgtctctataatatagacattatcatcctcatcatcatattaatttaaccatcattactctcctcatcg 24757595  T
Q  126 tcaaaatctaaacatcgtcatttctaattcgtatttatttatttacatatat--aatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    | | ||| ||||||| ||   |||  || |||||||||||||| ||||||||  |||||||||  ||||||||| |||||| ||||||| |||||||    
T  24757596 ttataatataaacattgt---ttcatat-cgtatttatttattcacatatatacaatatcaatcatcatcactcgttgtcaaaattatatgattcct 24757688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 24832087 - 24832039
Alignment:
Q  172 atatataatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||||||||||| |||  ||||||||||||||||||||||||||| ||||    
T  24832087 atatataatattaatcatcatcactctttgtcacaattataggactcct 24832039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 23657708 - 23657778
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattat 79  Q
    ||||||| |||||||| |||||| |||||||||||||||||| |||||||||| ||| |||||||||||||    
T  23657708 acatcattactctcatcatcatactaatatagttatcgtcatcctcatcatcactaacatataaacattat 23657778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 23658483 - 23658553
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattat 79  Q
    ||||||| |||||||| |||||| | |||||||||||||||| |||||||||| ||| |||||||||||||    
T  23658483 acatcattactctcatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattat 23658553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 130752 - 130823
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | |||||||||||||||| |||||||||| ||| ||||||||||||||    
T  130752 acatcattactctcatcatcatactgatatagttatcgtcatcctcatcatcactaacatataaacattatc 130823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 14334 - 14405
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||||| |||||| | ||||||||||||||||  ||||||||| ||| ||||||||||||||    
T  14334 acatcattactctcatcatcatactgatatagttatcgtcatcatcatcatcactaacatataaacattatc 14405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 3823 - 3752
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    |||| ||||||||||| |||||||| |||||||||||||||  ||| |||||| |||||||  |||||||||    
T  3823 acattatcactctcatcatcataatgatatagttatcgtcaccctcctcatcactaaaataataacattatc 3752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 15 - 167
Alignment:
Q  66 aatataaacattatcgttctcatcttcatcataatttaaccatcatcactctcatcattatcaaaatctaaacatcgtcatttctaattcgtatttattt 165  Q
    |||||| |||||||| | |||||| ||||  ||||||||||||||| |||||| ||||  | | ||| ||||||| ||   |||  || |||||||||||    
T  15 aatatagacattatcatcctcatcatcatattaatttaaccatcattactctcctcatcgttataatataaacattgt---ttcatat-cgtatttattt 110  T
Q  166 atttacatatat--aatatcaattgtcatcactctttgtcacaattataggattcct 220  Q
    ||| ||||||||  |||||||||  ||||||||| |||||| ||||||| |||||||    
T  111 attcacatatatacaatatcaatcatcatcactcgttgtcaaaattatatgattcct 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 29014 - 29085
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacattatc 80  Q
    ||||||| |||||| | |||||| | || ||||||||||||| |||||||||| ||| ||||||||||||||    
T  29014 acatcattactctcctcatcatactgatgtagttatcgtcatcctcatcatcactaacatataaacattatc 29085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28423 - 28356
Alignment:
Q  9 acatcatcactctcattatcataataatatagttatcgtcattctcatcatcattaaaatataaacat 76  Q
    ||||||| |||||||| |||||| | ||||||||||| |||| |||||||||| ||| ||||||||||    
T  28423 acatcattactctcatcatcatactgatatagttatcatcatcctcatcatcactaacatataaacat 28356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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