View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6934_low_14 (Length: 239)

Name: NF6934_low_14
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6934_low_14
NF6934_low_14
[»] chr2 (2 HSPs)
chr2 (1-222)||(24147478-24147686)
chr2 (1-222)||(24152928-24153136)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24147686 - 24147478
Alignment:
Q  1 tattgtaaagttagtgtgtccaggaaaaattgctcaaacttttcaagttatcatgtcatatgtcatgtgatcataataa---gattcaattcctctcaat 97  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||   ||||||||||||||||||    
T  24147686 tattataaagttggtgtgtacaggaaaaattgctcaaacttttcaagttat----------gtcatgtgatcataataataagattcaattcctctcaat 24147597  T
Q  98 gatatataatttaaaaacttaaacatttcaaatcctaagaaaacaacataaagtatcagatatcttgaaatagcttggtgtataggcaaaggttgagaat 197  Q
    ||||    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  24147596 gata----atttaaaaacttaaacttttcaaatcctaagaaaacaacataaagtatcagatatcttgaaatagcttggtg--taggcaaaggttgagaat 24147503  T
Q  198 gatatccctcaattacattagtcat 222  Q
    |||||||||||||||||||||||||    
T  24147502 gatatccctcaattacattagtcat 24147478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24153136 - 24152928
Alignment:
Q  1 tattgtaaagttagtgtgtccaggaaaaattgctcaaacttttcaagttatcatgtcatatgtcatgtgatcataataa---gattcaattcctctcaat 97  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||   ||||||||||||||||||    
T  24153136 tattataaagttggtgtgtacaggaaaaattgctcaaacttttcaagttat----------gtcatgtgatcataataataagattcaattcctctcaat 24153047  T
Q  98 gatatataatttaaaaacttaaacatttcaaatcctaagaaaacaacataaagtatcagatatcttgaaatagcttggtgtataggcaaaggttgagaat 197  Q
    ||||    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  24153046 gata----atttaaaaacttaaacttttcaaatcctaagaaaacaacataaagtatcagatatcttgaaatagcttggtg--taggcaaaggttgagaat 24152953  T
Q  198 gatatccctcaattacattagtcat 222  Q
    |||||||||||||||||||||||||    
T  24152952 gatatccctcaattacattagtcat 24152928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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