View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6934_low_2 (Length: 349)
Name: NF6934_low_2
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6934_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 18806444 - 18806630
Alignment:
| Q |
10 |
ggacatcaaccaatcaaccattttcttagatccaaccagatcaaaacatatttatgttaattttttacatatccaatctcaatttaacgatcacgaatga |
109 |
Q |
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| T |
18806444 |
ggacctcaaccaatcaaccattttcttagatccaaccagatcaaaaaatatttatgttaattttttacctatccaatctcaatttaacgatcacgaatga |
18806543 |
T |
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| Q |
110 |
cttatgaatgcgtctatttgcagacgacaagaaatcatggtcgaatttaggaagaaatgtcataagccagggagaatagaaaatgat |
196 |
Q |
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| T |
18806544 |
cttatgaatgcgtctatttgcagacgacaagaaatcatggtcgaatttaggaagaaatgtcataagccagggagaatagaaaatgat |
18806630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 187 - 333
Target Start/End: Original strand, 18807756 - 18807902
Alignment:
| Q |
187 |
agaaaatgatagacctcaaacgttcagcacgagccgatgcctggcatgcacgagctcttactgtactagcatctaatctccacgttccaattaattaagg |
286 |
Q |
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| T |
18807756 |
agaaaatgatagacctcaaacgttcagcacgagccgatgcatggcatgcacgagctcttactgtactggcatctaatctccacgttccaattaattaagg |
18807855 |
T |
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| Q |
287 |
ctagttgatggaatcgtgaagaatatacgattcaatatgcgtgatgt |
333 |
Q |
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| T |
18807856 |
ctagttgatggaatcgtgaagaatatacgattcaatatgcgtgatgt |
18807902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 18797726 - 18797797
Alignment:
| Q |
228 |
tggcatgcacgagctcttactgtactagcatctaatctccacgttccaattaattaaggctagttgatggaa |
299 |
Q |
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| T |
18797726 |
tggcatacacgagctcttactgtactggcatctaatctccacgttccaattaattaaggctagttgatggaa |
18797797 |
T |
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