View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6934_low_3 (Length: 345)
Name: NF6934_low_3
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6934_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 327
Target Start/End: Original strand, 56188667 - 56188999
Alignment:
| Q |
3 |
tggctatattattctgtaaaataggccactaatttaactttt--------ctaggagtcgttgatatcagaaattgatgatggaacttgatcattaattt |
94 |
Q |
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| T |
56188667 |
tggcaatattattctgtaaaataggccactaatttaacttttttaagtggctaggagtcattgatatcagaaattgatgatggaacttgatcattaattt |
56188766 |
T |
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| Q |
95 |
ttaagtccctgatggcctggaatttgtaatgtacccgcctatgagactagtaagcctgaaatgactggggacgatgggacactaattaaattaagtgtga |
194 |
Q |
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| T |
56188767 |
ttaagcctctgatggcctggagtttgtaatgtacccgcctatgaggctagtaagcctgaaatgactggggacgatgggacactaattaaattaagtttga |
56188866 |
T |
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| Q |
195 |
agaccatttattaaggggttggcaattgctgctccaaatgcagttaccaacttgattagaaaatccaatgaaattcactgttgcaattgctttaaagcga |
294 |
Q |
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| T |
56188867 |
agaccttttattaaggggttggcaattgctgctccaaatgcagttaccaacttaattagaaaatccaatgaaattcactgttgcaattgctttaaagcga |
56188966 |
T |
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| Q |
295 |
ctacttggtgttgcaacccttgatgttgagagg |
327 |
Q |
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| T |
56188967 |
ctacttggtgttgcaacccttgatgttgagagg |
56188999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 327
Target Start/End: Complemental strand, 2392392 - 2392259
Alignment:
| Q |
192 |
tgaagaccatttattaaggggttggcaattgctgctccaaatgcagttaccaacttgattagaaaatccaatgaaattcactgttgcaattgctttaaag |
291 |
Q |
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| T |
2392392 |
tgaagacctttagttaaggggttggcacttgctgctccagatacagttgccaacctgatgagaaaatgcaatgaattctactcttgcgattgctacaaag |
2392293 |
T |
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| Q |
292 |
cgactacttggtgttgcaacccttgatgttgagagg |
327 |
Q |
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| T |
2392292 |
cgactactcactgttacaaccc--gatgttgagagg |
2392259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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