View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6934_low_6 (Length: 321)
Name: NF6934_low_6
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6934_low_6 |
 | |
|
| [»] scaffold0100 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0302 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 21403640 - 21403931
Alignment:
| Q |
17 |
aacttcaccatccttcagattattctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403640 |
aacttcaccatccttcagattattctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaac |
21403739 |
T |
|
| Q |
117 |
agtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21403740 |
agtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctacttggagtttgcacaatcctaaagaagtta |
21403839 |
T |
|
| Q |
217 |
ccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21403840 |
ccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttga |
21403931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 21798132 - 21798423
Alignment:
| Q |
17 |
aacttcaccatccttcagattattctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798132 |
aacttcaccatccttcagattattctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaac |
21798231 |
T |
|
| Q |
117 |
agtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21798232 |
agtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctacttggagtttgcacaatcctaaagaagtta |
21798331 |
T |
|
| Q |
217 |
ccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21798332 |
ccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttga |
21798423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 21370403 - 21370692
Alignment:
| Q |
20 |
ttcaccatccttcagattattctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagt |
119 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21370403 |
ttcatcatccttcagattattctttctggaacacaatgggaaggggagtgccatcaagagccaacaaaatcttaccattctcacgaacaataccaacagt |
21370502 |
T |
|
| Q |
120 |
cccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttacca |
219 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||| |||||||| |||||| ||||| |||| || ||||| |||||| |||||||||||||| |
|
|
| T |
21370503 |
cccacattcaaacttacaattgggacacacttctgtagggcaccattgaatgttatagatatttctaactgcagtttctacaatcttaaagaagttacca |
21370602 |
T |
|
| Q |
220 |
tatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttgat |
309 |
Q |
| |
|
| ||||||||||||| | ||||||||| |||||| ||| || |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
21370603 |
aaggatccaactgtaccactatctcttccaatgataacgaatctccttccagttgttgcgtccctctcacccaatttccattctgttgat |
21370692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 309
Target Start/End: Original strand, 21934358 - 21934585
Alignment:
| Q |
82 |
aacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatac |
181 |
Q |
| |
|
|||| |||||||||||||||| | ||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || ||| | |||| |
|
|
| T |
21934358 |
aacaaaatcttaccattctcattcaacatatcaacagttccacattcaaatttacaacttggacatacctctgtaggacaccattgtatattatacatac |
21934457 |
T |
|
| Q |
182 |
ctctagttggagtttgcacaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtc |
281 |
Q |
| |
|
|| | ||| || | |||||||||||||||||||||||||||||| ||| | |||| | || |||||||| |||||||||||| || | | ||| |
|
|
| T |
21934458 |
cttcaagtggggtctctacaatcctaaagaagttaccatatgatccattggtagcactatctgtcccagtgataatcaaccttcttccactcttggtgtc |
21934557 |
T |
|
| Q |
282 |
cctctcacccaacctccattctgttgat |
309 |
Q |
| |
|
||||||| || ||||||||||||||| |
|
|
| T |
21934558 |
tttctcacctaatctccattctgttgat |
21934585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 4287069 - 4286805
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| |||| |||||||||| |||||||| || ||||||||||| ||||||||||||| || ||||||||||||||||| || |||||| |
|
|
| T |
4287069 |
attctttctggaacacaactggaagggcaccaccatcaagggccaacagaatcttgccattctcacgaataacaccaacagtcccacattgaaccttaca |
4286970 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttaccatatgatccaactgtacta |
237 |
Q |
| |
|
||| || ||| |||||||||| |||||||| |||||| ||||||| | |||| | || |||||||||||||| |||||||||| ||||| ||| || | |
|
|
| T |
4286969 |
actagggcacgcctctgtagggcaccattgaatgttatagataccaccagtttgggtctgcacaatcctaaaaaagttaccatgtgatc---ctgcacca |
4286873 |
T |
|
| Q |
238 |
tcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgt |
305 |
Q |
| |
|
| |||||||||||| | ||| | ||| |||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4286872 |
ttatctcttccggtaacaatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgt |
4286805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 305
Target Start/End: Complemental strand, 4295540 - 4295276
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| | || |||||||||| |||||||| || || |||||||| ||||||||||||| || ||||||||||||||||| || |||||| |
|
|
| T |
4295540 |
attctttctggaacacgacaggaagggcaccaccatcaagcgccaaaagaatcttgccattctcacgaataacaccaacagtcccacattgaaccttaca |
4295441 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttaccatatgatccaactgtacta |
237 |
Q |
| |
|
||| || ||| |||||||||| |||||||| |||||| ||||||| | |||| | || |||||||||||||| |||||||||| ||||| ||| || | |
|
|
| T |
4295440 |
actagggcacgcctctgtagggcaccattgaatgttatagataccaccagtttgggtctgcacaatcctaaaaaagttaccatgtgatc---ctgcacca |
4295344 |
T |
|
| Q |
238 |
tcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgt |
305 |
Q |
| |
|
| |||||||||||| | ||| | ||| |||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
4295343 |
ttatctcttccggtaacaatcagcctccttccactcgttgcgtccttctcacccaacctccaatctgt |
4295276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 89 - 304
Target Start/End: Complemental strand, 44443068 - 44442853
Alignment:
| Q |
89 |
tcttaccattctcacgaacaataccaacagtcccacattcaaacttacaacttggacacacctctgtaggacaccattggatgttaaagatacctctagt |
188 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||| ||| || || ||||| ||| |||| ||||||||||||||| ||||||| ||| |
|
|
| T |
44443068 |
tcttgccattctcacgaataataccaatagtcccacattcaaaccaacagctagggcacacttctctagggcaccattggatgttatagataccaagagt |
44442969 |
T |
|
| Q |
189 |
tggagtttgcacaatcctaaagaagttaccatatgatccaactgtactatcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctca |
288 |
Q |
| |
|
| | | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||| | ||| || ||| |||||||||||||||| |
|
|
| T |
44442968 |
ttggctctgcacaatcctaaagaagttaccaaatgatccaactgtaccatcatctcttccggtggtaataagcctcctaccactcgttgcgtccctctcg |
44442869 |
T |
|
| Q |
289 |
cccaacctccattctg |
304 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
44442868 |
cctaatctccattctg |
44442853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 308
Target Start/End: Complemental strand, 34320 - 34053
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| |||| ||||||||| |||||||| || |||||| |||| |||||||| |||| || ||||||||||||||||| | |||||| |
|
|
| T |
34320 |
attctttctggaacacaactggaagggcatcaccatcaagggccaacagattcttgccattctcgcgaataacaccaacagtcccacattgtaccttaca |
34221 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttaccatatgatccaactgtacta |
237 |
Q |
| |
|
||||||||| |||||||||| ||||| || |||||| || |||| | |||| |||| |||||||||||||| |||||||| | ||||| ||| || |
|
|
| T |
34220 |
acttggacaagcctctgtagggcaccactgaatgttataggtaccaccagtttgagtctgcacaatcctaaaaaagttaccttgtgatc---ctgcaccg |
34124 |
T |
|
| Q |
238 |
tcatctcttccggtgataatgaaccttcttccagtcgttgcgtccctctcacccaacctccattctgttga |
308 |
Q |
| |
|
| |||||||||||| | ||| ||||| |||||| ||||||| || |||| ||||| ||||| |||||||| |
|
|
| T |
34123 |
ttatctcttccggtaacaatcaacctccttccactcgttgcatctttctcgcccaatctccagtctgttga |
34053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 25796 - 25976
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| | || |||||||||| || || || || |||| |||||| ||||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
25796 |
attctttctggaacacgactggaagggcaccaccgtcgagggccaacaaaatcttgccattctcacgaataacaccaacagtcccacattgaatattaca |
25895 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttacc |
218 |
Q |
| |
|
||| || ||||||||| ||||||||||||| |||||| || |||||| |||| | || |||||||||||||| |||||||| |
|
|
| T |
25896 |
actagggcacacctctttaggacaccattgaatgttatagttacctccagtttgggtctgcacaatcctaaaaaagttacc |
25976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 17533 - 17353
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| | || |||||||||| ||||| || || |||| |||||| ||||||||||||| || ||||||||||||||||| || ||||| |
|
|
| T |
17533 |
attctttctggaacacgactggaagggcacgaccatcgagggccaacaaaatcttgccattctcacgaataacaccaacagtcccacattgaatattaca |
17434 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttacc |
218 |
Q |
| |
|
||| || ||||||||| |||| |||||||| |||||| || | || |||||| | || |||||||||||||| |||||||| |
|
|
| T |
17433 |
actagggcacacctctttagggcaccattgaatgttatagttgccactagtttgggtctgcacaatcctaaaaaagttacc |
17353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 14779 - 14959
Alignment:
| Q |
38 |
attctttttggaacgcaacgggaagggcactgccatcaagagctaacagaatcttaccattctcacgaacaataccaacagtcccacattcaaacttaca |
137 |
Q |
| |
|
||||||| |||||| | || |||||||||| ||||| || || |||| |||||| |||||||| |||| || ||||||||| ||||||| | |||||| |
|
|
| T |
14779 |
attctttctggaacacgactggaagggcaccaccatcgagggccaacaaaatctttccattctcgcgaataagaccaacagttccacattgattcttaca |
14878 |
T |
|
| Q |
138 |
acttggacacacctctgtaggacaccattggatgttaaagatacctctagttggagtttgcacaatcctaaagaagttacc |
218 |
Q |
| |
|
| | || |||||||||||||| |||||||| |||||| || | || |||||| | || |||||||||||||| |||||||| |
|
|
| T |
14879 |
attagggcacacctctgtagggcaccattgaatgttatagttgccactagtttgggtctgcacaatcctaaaaaagttacc |
14959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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