View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6934_low_7 (Length: 307)

Name: NF6934_low_7
Description: NF6934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6934_low_7
NF6934_low_7
[»] chr2 (42 HSPs)
chr2 (13-299)||(2062870-2063154)
chr2 (44-200)||(16959994-16960150)
chr2 (44-185)||(22885061-22885202)
chr2 (44-203)||(33788542-33788701)
chr2 (44-181)||(15126342-15126479)
chr2 (44-194)||(27739987-27740137)
chr2 (44-191)||(4471935-4472081)
chr2 (44-190)||(25504831-25504978)
chr2 (54-186)||(3745356-3745489)
chr2 (54-190)||(27880054-27880188)
chr2 (44-178)||(10173512-10173647)
chr2 (62-158)||(16952337-16952434)
chr2 (62-158)||(17023002-17023099)
chr2 (62-158)||(17060308-17060405)
chr2 (47-175)||(18681080-18681208)
chr2 (44-175)||(31902352-31902483)
chr2 (44-162)||(14405210-14405330)
chr2 (100-185)||(43816384-43816469)
chr2 (44-117)||(1269495-1269568)
chr2 (62-133)||(17079199-17079271)
chr2 (53-172)||(7695984-7696102)
chr2 (44-202)||(29487143-29487301)
chr2 (62-172)||(34230231-34230341)
chr2 (44-115)||(39338863-39338934)
chr2 (44-116)||(7874303-7874375)
chr2 (98-175)||(12793669-12793745)
chr2 (44-172)||(13337286-13337414)
chr2 (47-172)||(37770583-37770707)
chr2 (47-158)||(915408-915518)
chr2 (44-117)||(14106520-14106593)
chr2 (87-175)||(20572130-20572218)
chr2 (44-116)||(387185-387257)
chr2 (44-92)||(4162041-4162089)
chr2 (44-116)||(5254268-5254340)
chr2 (44-84)||(10524109-10524149)
chr2 (44-84)||(23650397-23650437)
chr2 (44-103)||(36276182-36276240)
chr2 (47-81)||(9560820-9560854)
chr2 (113-171)||(29044778-29044836)
chr2 (212-299)||(4472117-4472206)
chr2 (14-50)||(14566410-14566446)
chr2 (82-172)||(41086738-41086826)
[»] chr5 (26 HSPs)
chr5 (44-191)||(22675246-22675393)
chr5 (44-201)||(27713081-27713238)
chr5 (44-186)||(39184112-39184256)
chr5 (44-190)||(8730929-8731076)
chr5 (44-172)||(13954175-13954303)
chr5 (56-190)||(24072190-24072323)
chr5 (62-158)||(8297498-8297594)
chr5 (54-175)||(31721699-31721820)
chr5 (44-172)||(14302371-14302499)
chr5 (44-115)||(698373-698444)
chr5 (44-171)||(7391979-7392100)
chr5 (47-172)||(21402778-21402903)
chr5 (44-172)||(7195181-7195308)
chr5 (44-143)||(34378110-34378210)
chr5 (44-204)||(23426356-23426505)
chr5 (44-117)||(25992019-25992092)
chr5 (44-117)||(26045960-26046033)
chr5 (47-178)||(17854001-17854133)
chr5 (57-111)||(39024452-39024506)
chr5 (44-133)||(33258862-33258951)
chr5 (56-114)||(18593267-18593325)
chr5 (44-92)||(29087493-29087541)
chr5 (49-133)||(25658131-25658217)
chr5 (212-297)||(39183985-39184071)
chr5 (215-283)||(17853870-17853937)
chr5 (215-267)||(31742377-31742428)
[»] chr1 (36 HSPs)
chr1 (56-283)||(50589023-50589264)
chr1 (44-299)||(19598648-19598921)
chr1 (44-203)||(42374175-42374335)
chr1 (44-204)||(17033598-17033760)
chr1 (13-191)||(19598598-19598795)
chr1 (44-175)||(4651792-4651922)
chr1 (44-186)||(38544664-38544807)
chr1 (54-172)||(27102213-27102331)
chr1 (43-168)||(34774882-34775007)
chr1 (44-172)||(6583157-6583285)
chr1 (44-158)||(24658941-24659057)
chr1 (44-116)||(46814464-46814536)
chr1 (44-115)||(31585758-31585829)
chr1 (44-115)||(41920464-41920535)
chr1 (44-115)||(46692817-46692888)
chr1 (54-115)||(5389419-5389480)
chr1 (44-158)||(27031793-27031909)
chr1 (62-117)||(10785455-10785510)
chr1 (44-116)||(7857665-7857737)
chr1 (46-157)||(32864517-32864628)
chr1 (44-115)||(30685902-30685973)
chr1 (47-156)||(40933878-40933987)
chr1 (44-158)||(27905424-27905533)
chr1 (95-174)||(2988058-2988138)
chr1 (44-158)||(24684431-24684547)
chr1 (100-176)||(28395026-28395103)
chr1 (44-85)||(30655572-30655613)
chr1 (44-84)||(5459173-5459213)
chr1 (62-118)||(16147585-16147641)
chr1 (56-95)||(9313307-9313346)
chr1 (44-98)||(46603404-46603458)
chr1 (44-85)||(15840940-15840981)
chr1 (44-81)||(38564913-38564950)
chr1 (49-113)||(9081506-9081569)
chr1 (216-299)||(38548856-38548941)
chr1 (45-85)||(42374049-42374089)
[»] chr7 (44 HSPs)
chr7 (44-191)||(48058576-48058723)
chr7 (44-186)||(47456949-47457091)
chr7 (44-193)||(13311851-13312000)
chr7 (44-189)||(11379052-11379196)
chr7 (44-189)||(9428030-9428174)
chr7 (47-176)||(12480901-12481031)
chr7 (44-175)||(46133214-46133347)
chr7 (44-175)||(38485568-38485698)
chr7 (47-172)||(3478367-3478492)
chr7 (44-158)||(6584921-6585037)
chr7 (44-172)||(6716678-6716805)
chr7 (57-181)||(22568043-22568168)
chr7 (44-158)||(34389974-34390090)
chr7 (44-172)||(42533194-42533321)
chr7 (45-172)||(8745166-8745293)
chr7 (44-115)||(47325883-47325954)
chr7 (44-158)||(41089701-41089817)
chr7 (47-172)||(24324738-24324864)
chr7 (44-162)||(1320806-1320925)
chr7 (47-115)||(3419654-3419722)
chr7 (44-115)||(38306273-38306344)
chr7 (45-115)||(10244195-10244265)
chr7 (44-118)||(23983207-23983281)
chr7 (56-116)||(35745824-35745884)
chr7 (44-115)||(9349761-9349832)
chr7 (48-163)||(26386125-26386240)
chr7 (47-162)||(3867131-3867248)
chr7 (44-117)||(16954665-16954739)
chr7 (62-158)||(36449113-36449210)
chr7 (212-298)||(47456819-47456909)
chr7 (48-115)||(5860286-5860353)
chr7 (44-102)||(1820013-1820071)
chr7 (55-101)||(33435132-33435178)
chr7 (105-190)||(9107234-9107319)
chr7 (44-81)||(27993568-27993605)
chr7 (62-115)||(37795019-37795072)
chr7 (150-198)||(12546322-12546370)
chr7 (212-258)||(9107355-9107401)
chr7 (56-117)||(16828931-16828993)
chr7 (39-92)||(17802837-17802890)
chr7 (44-77)||(25153232-25153265)
chr7 (54-115)||(44353562-44353623)
chr7 (44-81)||(46262151-46262188)
chr7 (44-84)||(25160827-25160867)
[»] chr4 (41 HSPs)
chr4 (44-209)||(12296187-12296352)
chr4 (55-191)||(28966890-28967026)
chr4 (44-191)||(38929839-38929986)
chr4 (44-172)||(35800501-35800629)
chr4 (77-200)||(21983734-21983857)
chr4 (47-157)||(16501746-16501858)
chr4 (44-185)||(46698712-46698854)
chr4 (44-172)||(53823362-53823490)
chr4 (44-117)||(25753184-25753257)
chr4 (56-179)||(41117901-41118024)
chr4 (44-133)||(19673113-19673201)
chr4 (44-117)||(22811156-22811229)
chr4 (44-172)||(19815161-19815293)
chr4 (44-161)||(24740054-24740172)
chr4 (44-172)||(38637174-38637301)
chr4 (46-168)||(39420958-39421080)
chr4 (44-125)||(6599932-6600014)
chr4 (44-158)||(21387159-21387273)
chr4 (87-176)||(43374031-43374120)
chr4 (54-176)||(43077000-43077126)
chr4 (44-133)||(8255039-8255129)
chr4 (44-133)||(8268457-8268547)
chr4 (212-285)||(38930021-38930094)
chr4 (44-117)||(49747539-49747612)
chr4 (44-172)||(2061679-2061807)
chr4 (44-115)||(4305737-4305808)
chr4 (61-116)||(35341335-35341390)
chr4 (212-299)||(12296370-12296460)
chr4 (212-266)||(21983654-21983708)
chr4 (48-116)||(2825799-2825867)
chr4 (44-116)||(31050659-31050731)
chr4 (211-283)||(46487465-46487536)
chr4 (61-117)||(48098362-48098418)
chr4 (13-50)||(21988007-21988045)
chr4 (55-101)||(30167576-30167622)
chr4 (45-111)||(30964454-30964520)
chr4 (13-50)||(38929789-38929827)
chr4 (56-117)||(16833017-16833078)
chr4 (44-101)||(36962628-36962684)
chr4 (44-85)||(39041302-39041343)
chr4 (44-81)||(40813813-40813850)
[»] chr3 (30 HSPs)
chr3 (48-199)||(47945722-47945873)
chr3 (44-182)||(5556582-5556721)
chr3 (49-176)||(1652823-1652950)
chr3 (44-175)||(27398970-27399102)
chr3 (44-170)||(33143891-33144018)
chr3 (54-172)||(823375-823494)
chr3 (47-176)||(30935326-30935456)
chr3 (44-158)||(43012387-43012503)
chr3 (44-116)||(19176514-19176586)
chr3 (56-190)||(25594454-25594577)
chr3 (44-115)||(17550969-17551040)
chr3 (44-151)||(9584013-9584122)
chr3 (47-158)||(23328303-23328416)
chr3 (47-117)||(37123397-37123467)
chr3 (47-116)||(39021273-39021342)
chr3 (44-142)||(40023541-40023641)
chr3 (44-117)||(14193952-14194027)
chr3 (44-116)||(45398808-45398880)
chr3 (44-172)||(14879447-14879576)
chr3 (72-176)||(38488835-38488940)
chr3 (46-115)||(2392504-2392573)
chr3 (212-299)||(25594328-25594417)
chr3 (44-102)||(30127274-30127333)
chr3 (44-117)||(14755260-14755334)
chr3 (46-111)||(2394255-2394320)
chr3 (62-115)||(20611813-20611866)
chr3 (71-184)||(46358315-46358428)
chr3 (44-84)||(34475783-34475823)
chr3 (44-81)||(20710740-20710777)
chr3 (44-85)||(31424248-31424289)
[»] chr8 (23 HSPs)
chr8 (44-217)||(15906698-15906872)
chr8 (47-209)||(17720610-17720771)
chr8 (44-176)||(30236064-30236197)
chr8 (44-175)||(35062469-35062600)
chr8 (55-172)||(17656943-17657060)
chr8 (55-168)||(41791209-41791322)
chr8 (44-175)||(10552280-10552410)
chr8 (47-172)||(10248494-10248619)
chr8 (56-133)||(32945683-32945760)
chr8 (44-115)||(24995393-24995464)
chr8 (44-151)||(32066256-32066364)
chr8 (44-160)||(15821330-15821448)
chr8 (44-111)||(31207364-31207431)
chr8 (44-118)||(12198064-12198138)
chr8 (44-118)||(12442492-12442566)
chr8 (44-116)||(36630849-36630921)
chr8 (44-115)||(9519511-9519582)
chr8 (44-115)||(34389003-34389074)
chr8 (54-115)||(16457459-16457520)
chr8 (44-115)||(37986856-37986927)
chr8 (44-115)||(41893399-41893469)
chr8 (212-280)||(15906882-15906949)
chr8 (54-115)||(20138448-20138509)
[»] scaffold0499 (1 HSPs)
scaffold0499 (44-201)||(6570-6727)
[»] chr6 (18 HSPs)
chr6 (44-176)||(9224053-9224186)
chr6 (55-201)||(13098483-13098629)
chr6 (44-176)||(26534652-26534788)
chr6 (44-172)||(26215960-26216088)
chr6 (46-176)||(21266127-21266257)
chr6 (44-172)||(32935280-32935408)
chr6 (56-197)||(33968531-33968670)
chr6 (48-172)||(13423482-13423606)
chr6 (54-172)||(20701744-20701862)
chr6 (49-157)||(21265003-21265111)
chr6 (47-115)||(3117508-3117576)
chr6 (54-192)||(15944041-15944178)
chr6 (87-172)||(15120538-15120623)
chr6 (47-78)||(20499934-20499965)
chr6 (44-78)||(7546464-7546498)
chr6 (47-85)||(34105428-34105466)
chr6 (61-118)||(12794144-12794201)
chr6 (142-178)||(16180837-16180873)
[»] scaffold1613 (1 HSPs)
scaffold1613 (44-186)||(943-1086)
[»] scaffold0200 (1 HSPs)
scaffold0200 (44-172)||(19395-19523)
[»] scaffold0119 (1 HSPs)
scaffold0119 (44-117)||(42134-42207)
[»] scaffold0063 (1 HSPs)
scaffold0063 (47-133)||(58142-58228)
[»] scaffold0050 (1 HSPs)
scaffold0050 (56-158)||(36731-36835)
[»] scaffold0068 (1 HSPs)
scaffold0068 (44-115)||(35770-35840)
[»] scaffold0620 (1 HSPs)
scaffold0620 (44-85)||(3842-3883)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 2062870 - 2063154
Alignment:
Q  13 attctctggtggaccggggtaaggggtgcccgtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2062870 attctctggtggaccggggtaaggggtgcccgtctggtgggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 2062969  T
Q  113 ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatt 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  2062970 ttttttggtgttctttcggtgtaccagaggttgtgaggttgtggaaactgattgatcttt--aatagtggctcagcttaggcgatgcggacagagtgatt 2063067  T
Q  213 tattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagtttttaggtggtgatgt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2063068 tattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagtttttaggtggtgatgt 2063154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 16959994 - 16960150
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  16959994 gtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggcttatttggtgttctttcggtggaccagaggt 16960093  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcg 200  Q
    |||||| ||||||||  |||||| ||||| ||||| ||||||| | |||| ||||||    
T  16960094 tgtgagctggtggaagttgattgttctttggaataatggctcagcgtaggtgatgcg 16960150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 22885202 - 22885061
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  22885202 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggttgttttggtgttctttcggtggaccagaggt 22885103  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctc 185  Q
    || ||||||||||||  |||||||||| ||||||||||||||    
T  22885102 tgagaggtggtggaagttgattgatctatagaatagtggctc 22885061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 33788701 - 33788542
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||| |||||| |||||| | ||||||||||||||||||| |||||||||    
T  33788701 gtctggtgggccgatcgcttttgattcgagattgggagtcagttctttggttcaggtttggctttgggttgttttggtgttctttcggtgaaccagaggt 33788602  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggac 203  Q
    || |||||||||||| ||||||||||| |||| |||||||||| |||||| |||| ||||    
T  33788601 tgagaggtggtggaagctgattgatctatagattagtggctcagcttaggtgatgaggac 33788542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 15126479 - 15126342
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| ||||||  |||||||||||||||||||||| | ||||||||||| |||||||||||||||||| ||||||||||||||||  || |||||    
T  15126479 gtctggtgggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggcttttatggtgttctttcggtggtccggaggt 15126380  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtg 181  Q
    |||||||||||||||||| |||||||||||||||||||    
T  15126379 tgtgaggtggtggaaacttattgatctttagaatagtg 15126342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 27739987 - 27740137
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| ||||||||||||||||| |||||| |||||||   || || ||||||||||| ||||| | ||||||||||||||||||| |||||||||    
T  27739987 gtctggtgggccgatcgcttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttgggttgttttggtgttctttcggtggaccagaggt 27740086  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggc 194  Q
    || |||||||||||||||||||||||| | |||||||||||||||||||||    
T  27740087 tgagaggtggtggaaactgattgatctatggaatagtggctcaacttaggc 27740137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 4471935 - 4472081
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||| |||||||||||| |||| ||| |||||    
T  4471935 gtctggtgggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctttattggtgttcttttggtggaccggaggt 4472034  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaactta 191  Q
        ||||||| ||| ||||||||||||||||||||||||||||||||    
T  4472035 caa-aggtggtagaagctgattgatctttagaatagtggctcaactta 4472081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 25504978 - 25504831
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||| || |||  |||    
T  25504978 gtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaagg 25504879  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaactt 190  Q
    ||  |||||||||||| || |||||| |||||||||| ||||||||||    
T  25504878 ttcagaggtggtggaagctaattgatatttagaatagcggctcaactt 25504831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 3745356 - 3745489
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggcttttttggtgttctttcggtgtaccagaggttgtgaggtg 152  Q
    |||||||||||| |||||||||||| |||||| ||||||| | |||||| ||||| ||||||||||| ||||||||||||| | ||||||||   | |||    
T  3745356 ccgatcgcttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtttaaaagtg 3745455  T
Q  153 gtggaaactgattgatctttagaatagtggctca 186  Q
    |||||  |||||||||||||||||||||||||||    
T  3745456 gtggaggctgattgatctttagaatagtggctca 3745489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 27880188 - 27880054
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtgg 153  Q
    ||||||| ||||||||||||||||| |||||| | ||||| |||||||||| |||||||| ||||| ||||||||||||| ||| |||| || |||||||    
T  27880188 ccgatcgattttgattcgagatcggaagtcagttatttggttcaagtttgg-tttgggctgttttgttgttctttcggtg-accggaggatgagaggtgg 27880091  T
Q  154 tggaaactgattgatctttagaatagtggctcaactt 190  Q
    || || |||||||||||| |||||| |||||||||||    
T  27880090 tgaaagctgattgatcttgagaataatggctcaactt 27880054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 178
Target Start/End: Complemental strand, 10173647 - 10173512
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt-ttggtgttctttcggtgtaccagagg 142  Q
    |||| |||| |||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  10173647 gtctagtgggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggcttttgttggtgttctttcggtgaatcggagg 10173548  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaata 178  Q
    | | ||||||||||||  ||| |||||||| |||||    
T  10173547 tcgagaggtggtggaagttgaatgatcttttgaata 10173512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 16952434 - 16952337
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 158  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 16952337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 17023099 - 17023002
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 158  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 17023002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 17060405 - 17060308
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 158  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||| | | ||||||| ||||||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtggaa 17060308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 18681080 - 18681208
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||| ||||| || ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||||| || |||| | |||||||||     
T  18681080 tggtgggccgattgcatttgattcgagatcgggagtcagttctctggttcaagtttggttttgggcttttgtggtgttcctttggtggatcagaggttgc 18681179  T
Q  147 gaggtggtggaaactgattgatctttaga 175  Q
      ||||||| || |||| |||||||||||    
T  18681180 acggtggtgaaagctgaatgatctttaga 18681208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 31902483 - 31902352
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| || ||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||| |||| |||| ||||| || |||| ||| |||||    
T  31902483 gtctggtgggccaatcgcttttaattcgagatcgggagtcagttctctggttcaagtttggttttgagcttatttgatgttcctttggtggaccggaggt 31902384  T
Q  144 tgtgaggtggtggaaactgattgatctttaga 175  Q
    || | ||||| |||| |||| |||||||||||    
T  31902383 tgcgtggtgggggaagctgaatgatctttaga 31902352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 14405210 - 14405330
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||  ||| ||| |||||||||| | ||||     
T  14405210 gtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggcttttgttttgtgctctttcggtggatcagaa 14405309  T
Q  142 gttgtgaggtggtggaaactg 162  Q
    || | | ||| ||||||||||    
T  14405310 gtcgagtggttgtggaaactg 14405330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 43816469 - 43816384
Alignment:
Q  100 tttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctc 185  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||   ||||||||||  ||||||||||||||||||||||||||    
T  43816469 tttggttttgggcttttttggtattctttcggtggaccagaggtttaaaggtggtggaggctgattgatctttagaatagtggctc 43816384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 1269495 - 1269568
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  1269495 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttt 1269568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 17079199 - 17079271
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtg 133  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||    
T  17079199 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtg 17079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 7695984 - 7696102
Alignment:
Q  53 accgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtg 152  Q
    ||||||| |||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||  ||| ||||||||||| | |  |||| | ||||||    
T  7695984 accgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggcttttacggt-ttctttcggtggatcgaaggtcgggaggtg 7696082  T
Q  153 gtggaaactgattgatcttt 172  Q
    |||||| |||| ||||||||    
T  7696083 gtggaagctgaatgatcttt 7696102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 202
Target Start/End: Original strand, 29487143 - 29487301
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggcttttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| || ||||||||||||||||||| |  |||||| |||| || ||| |||||||||| ||||| || || ||||||||||||  ||||||||    
T  29487143 gtctggtgg-ccaatcgcttttgattcgagattgatagtcagttcttcggttcatgtttggtttttgggctgttatgatgttctttcggttgaccagagg 29487241  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcgga 202  Q
    ||||| |||||||||| |||||||||   | ||||||||||||  |||||| | ||||||    
T  29487242 ttgtgtggtggtggaagctgattgattcatggaatagtggctcggcttaggagttgcgga 29487301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 34230231 - 34230341
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaac 160  Q
    |||| |||||||||| |||||||| ||||||| ||||||||| ||||||||||||| |||| ||||||||||| | | ||||||| |||||||||||| |    
T  34230231 tttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggt-ttctttcggtggatcggaggttgagaggtggtggaagc 34230329  T
Q  161 tgattgatcttt 172  Q
    ||| ||||||||    
T  34230330 tgaatgatcttt 34230341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 39338934 - 39338863
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  39338934 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 39338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7874303 - 7874375
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  7874303 gtctggtgggtcgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggctttt 7874375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 12793745 - 12793669
Alignment:
Q  98 agtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttaga 175  Q
    ||||||||||||||||||| |||||||| |||| || ||| ||||||||| |||||||||| |||| |||||||||||    
T  12793745 agtttggttttgggcttttatggtgttccttcg-tggaccggaggttgtgcggtggtggaagctgaatgatctttaga 12793669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 13337286 - 13337414
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||| ||| |||||| |||||||||||| ||||| |||||| |||||| |||||||| |||||||| |||||| |||| ||||||||||| |   ||||    
T  13337286 gtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttggactttttatggt-ttctttcggtggataggagg 13337384  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | ||||||||| | ||||| ||||||||    
T  13337385 tcgagaggtggtgaacactgaatgatcttt 13337414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 37770707 - 37770583
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||| |||||| ||||||||||  |||| |||||||  ||||| | |||| ||||||||||||||||| |||| ||||||||||| | | ||||| |     
T  37770707 tggtgggccgatcacttttgattctggatcaggagtcaattctttagatcaattttggttttgggcttttatggt-ttctttcggtgaatcggaggtcga 37770609  T
Q  147 gaggtggtggaaactgattgatcttt 172  Q
    |||||| ||||| |||| ||||||||    
T  37770608 gaggtgttggaagctgaatgatcttt 37770583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 915518 - 915408
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||| | ||||||||||||||||||||||  |||||| | ||||  ||||||||||||||||   ||||| || ||||||||||| ||| |||||||     
T  915518 tggtgggctgatcgcttttgattcgagatcgaaagtcagtt-tttgattcaagtttggttttggagctttttagtattctttcggtgcaccggaggttgc 915420  T
Q  147 gaggtggtggaa 158  Q
    | ||||||||||    
T  915419 gcggtggtggaa 915408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 14106593 - 14106520
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||| |||||| |||||||||| |||||||||||||||||||| | |||  ||||||||| || |||||    
T  14106593 gtctggtgggccgatcacttttgattcaagatcgggagtcagctctttagatcagttttggtttttgggttttt 14106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 20572130 - 20572218
Alignment:
Q  87 tctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttaga 175  Q
    |||||| || ||||||| ||||||| ||||||||||||||||||||| | |||| |||| ||| || | ||||||||  ||||||||||    
T  20572130 tctttgacttaagtttgattttgggtttttttggtgttctttcggtggatcagaagttgagagatgcttgaaactgaacgatctttaga 20572218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 387185 - 387257
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| | |||| ||||||||| ||||||||||||||  |||||| |||||||| | ||||| ||||||    
T  387185 gtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttgagctttt 387257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 4162089 - 4162041
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttg 92  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||| ||||    
T  4162089 gtctggtgggccgatcacttttgattcgagatcgggagccagctttttg 4162041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 5254268 - 5254340
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||| |||| |||||| ||||| ||| ||||||||||||| ||||||||| ||||||| | ||| ||||||||    
T  5254268 gtctagtgggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggctttt 5254340  T

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Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 10524109 - 10524149
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtca 84  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  10524109 gtctggtgggccgatcacttttgattcgagatcgggagtca 10524149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 23650397 - 23650437
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtca 84  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  23650397 gtctggtgggctgatcgcttttgattcgagatcgggagtca 23650437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 36276240 - 36276182
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttg 103  Q
    ||||||||| | | |||||||||||||||||||||||||||  |||||| ||||||||||    
T  36276240 gtctggtgggctgttcgcttttgattcgagatcgggagtca-atctttgactcaagtttg 36276182  T

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Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 9560854 - 9560820
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggag 81  Q
    ||||||||||||| |||||||||||||||||||||    
T  9560854 tggtggaccgatcacttttgattcgagatcgggag 9560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 29044836 - 29044778
Alignment:
Q  113 ttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctt 171  Q
    ||||| ||||||||||||||| |||||||||||||  ||||||||  ||| ||||||||    
T  29044836 tttttaggtgttctttcggtggaccagaggttgtgcagtggtggaggctgtttgatctt 29044778  T

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Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 4472117 - 4472206
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 299  Q
    |||||||||||||  ||||||| ||   |||||||||||| || ||||||||||||| |||||| ||||| |   ||||||||||||||||    
T  4472117 ttattttgggttgtctagtggcgattggtggttatggataacg-tttttcagtggtcatttcttaaaggactctattttaggtggtgatgt 4472206  T

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Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 14566410 - 14566446
Alignment:
Q  14 ttctctggtggaccggggtaaggggtgcccgtctggt 50  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  14566410 ttctctggtggactggggttaggggtgcccgtctggt 14566446  T

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Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 41086826 - 41086738
Alignment:
Q  82 tcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatcttt 172  Q
    |||||||||||| |  |||||||||||||||||||| |||| | ||||||||| | | ||||| | |||||||||||| |||| ||||||||    
T  41086826 tcagctctttggat--agtttggttttgggctttttatggt-tcctttcggtggatcggaggtcgagaggtggtggaagctgaatgatcttt 41086738  T

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Target: chr5 (Bit Score: 104; Significance: 7e-52; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 22675393 - 22675246
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||| |||  || |||||    
T  22675393 gtctggtggaccgatcgattttgattcgagatcgggagtcagttctttggctcaagtttggttttgggctttaatggtgttctttcagtggtccggaggt 22675294  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaactta 191  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||    
T  22675293 tgtgaggtggtggaagttgattgatctttagactagtggctcaactta 22675246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 27713081 - 27713238
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||| |||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||  | ||||||    
T  27713081 gtctagtgggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggcttttatgttgttctttcggtggtctagaggt 27713180  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcgg 201  Q
    ||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  27713181 tgtcaggtggtggaaacttattgatctttagaatagtggctcaacttatgggatgcgg 27713238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 39184256 - 39184112
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag--tttggttttgggcttttttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| |||||||||||||||||| |||||| ||||||| |||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  39184256 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagcttttttggtgttctttcggtggaccagag 39184157  T
Q  142 gttgtgaggtggtggaaactgattgatctttagaatagtggctca 186  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||    
T  39184156 gttgtgaggtagtggaagctgattgatcttttgaatagtggctca 39184112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 8730929 - 8731076
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||| || |||  |||    
T  8730929 gtctggtggacctatcgcttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaagg 8731028  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaactt 190  Q
    ||  |||||||||||| || |||||| |||||||||| ||||||||||    
T  8731029 ttcagaggtggtggaagctaattgatatttagaatagcggctcaactt 8731076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 13954303 - 13954175
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||| |||| ||||||||||| | | || |    
T  13954303 gtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttggttttgggctttttatggt-ttctttcggtggatcggaag 13954205  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    |||  |||||||||||||||||||||||||    
T  13954204 ttgaaaggtggtggaaactgattgatcttt 13954175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 24072323 - 24072190
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtg 155  Q
    |||||||||||||| |||||||| |||||| ||||||| ||||||| | ||| ||| ||||||||||||||||||||| ||| |||||||  |||||||     
T  24072323 gatcgcttttgatttgagatcggaagtcagttctttggttcaagtt-gatttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggtt 24072225  T
Q  156 gaaactgattgatctttagaatagtggctcaactt 190  Q
    ||  |||| || |||||||||||||| ||||||||    
T  24072224 gatgctgaatggtctttagaatagtgactcaactt 24072190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 8297498 - 8297594
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaa 158  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||| | | ||||| ||||||||||||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttttatggt-ttctttcggtgaatcggaggtcgtgaggtggtggaa 8297594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 31721699 - 31721820
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtgg 153  Q
    |||||||||||||||||||||||||||||||| ||| ||| |||  |||||||||||| | ||||||||||| ||| ||| ||| || |||| | |||||    
T  31721699 ccgatcgcttttgattcgagatcgggagtcagttctctggttcatttttggttttgggttgttttggtgttccttcagtggaccggatgttgcgcggtgg 31721798  T
Q  154 tggaaactgattgatctttaga 175  Q
    |||||  |||||||||||||||    
T  31721799 tggaagttgattgatctttaga 31721820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 14302499 - 14302371
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||||||||| |||| |||||| |||||||| ||||||||| |||||||  |||||||||||||||||||||| |||| ||||||||||| | | ||||    
T  14302499 gtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttggttttgggctttttatggt-ttctttcggtggatcggagg 14302401  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | |||||||||||| |||  ||||||||    
T  14302400 tcgagaggtggtggaagctgcatgatcttt 14302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 698373 - 698444
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| | |||||||||||    
T  698373 gtctggtggaccgatctcttttgattcgagatcgggagtcaactctttgactcaagttggtttttgggcttt 698444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 7392100 - 7391979
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||      |||||||||||||||| |||| ||||||||||| | | |||||    
T  7392100 gtctggtggaccgatcacttttgattcgagatcgggagtcagttctttggc-----attggttttgggcttttatggt-ttctttcggtggatcggaggt 7392007  T
Q  144 tgtgaggtggtggaaactgattgatctt 171  Q
     | |||||||| ||| | ||||||||||    
T  7392006 cgagaggtggttgaagcggattgatctt 7391979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 21402903 - 21402778
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttg 145  Q
    |||||| |||||| |||||  |||||||||||||||||| |||||| |||| ||||||||||| ||||||| |||| ||||||||||| |   |||||||    
T  21402903 tggtgggccgatcacttttagttcgagatcgggagtcagttctttgactcaggtttggttttgagctttttatggt-ttctttcggtggattggaggttg 21402805  T
Q  146 tgaggtggtggaaactgattgatcttt 172  Q
     ||||||||||||  ||||||||||||    
T  21402804 agaggtggtggaagttgattgatcttt 21402778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 7195308 - 7195181
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||  |||||| ||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||| |||| || |||||||| | | |||||    
T  7195308 gtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagttagagtttgggcttttatggt-ttttttcggtggatcggaggt 7195210  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
     | ||||| |||||| |||| | ||||||    
T  7195209 cgagaggtcgtggaagctgaataatcttt 7195181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 34378110 - 34378210
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| | |||||| | ||||||||||| ||| ||| |||||||||| ||| ||||    
T  34378110 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggctttgttttgtgctctttcggtggaccggagg 34378209  T
Q  143 t 143  Q
    |    
T  34378210 t 34378210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 23426356 - 23426505
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||||||||| | ||||||||||||||| ||||||||| |||| |  |||| |||||||||||||           | |||||||| |||||||||    
T  23426356 gtctggtggaccgaacacttttgattcgagattgggagtcagttcttcgaatcaattttggttttgggc-----------tatttcggtggaccagaggt 23426444  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggaca 204  Q
    |||| |||||||||| ||||||||||  | |||| |||||||| |||||| | ||||||||    
T  23426445 tgtgtggtggtggaagctgattgatccatggaattgtggctcagcttaggagttgcggaca 23426505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 25992019 - 25992092
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||| || ||||||||||||||||||||| ||||||| ||||| |||| || |||||||||||||||||    
T  25992019 gtctggtgggccaatcgcttttgattcgagatcgagagtcagttctttagctcgaggttggttttgggcttttt 25992092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 26046033 - 26045960
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    |||||||| ||||||| |||||||||||||||||||||| ||   |||||||||||||||||||||| ||||||    
T  26046033 gtctggtgaaccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttggacttttt 26045960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 17854133 - 17854001
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttg 145  Q
    |||||| |||| ||||||||| ||||||||||||||||  | ||||| |||||||    ||||||||| ||||  ||||||||||||| ||| || ||||    
T  17854133 tggtgggccgaccgcttttgactcgagatcgggagtcaattatttggttcaagttctactttgggcttattttaatgttctttcggtggacctgaagttg 17854034  T
Q  146 tgaggtggtggaaactgattgatctttagaata 178  Q
     ||||||||||||  ||| ||||||||||||||    
T  17854033 agaggtggtggaagttgaatgatctttagaata 17854001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 39024506 - 39024452
Alignment:
Q  57 atcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 111  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  39024506 atcgcttttgattcgagatcgggagtcacttctttggttcaagtttggttttggg 39024452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 33258951 - 33258862
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtg 133  Q
    ||||||||| |||||| |||||||||||||||| ||||| || ||||||| || || |||| |||||||||||| |||| |||||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttctttggttcgaggttggatttgggctttttatggt-ttctttcggtg 33258862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 18593267 - 18593325
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt 114  Q
    |||| |||||||||||||||||||||| || |||||| |||||||| | ||||||||||    
T  18593267 gatcacttttgattcgagatcgggagttagttctttgactcaagttggtttttgggctt 18593325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 29087493 - 29087541
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttg 92  Q
    ||||||||||| |||| |||||||||||||||| |||||||| ||||||    
T  29087493 gtctggtggactgatcccttttgattcgagatcaggagtcagttctttg 29087541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 25658217 - 25658131
Alignment:
Q  49 gtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggct-tttttggtgttctttcggtg 133  Q
    |||| ||||||||||||||||| |||  ||||||||| |||||   ||||| ||| |||||||||| ||| ||||||||||||||||    
T  25658217 gtgggccgatcgcttttgattctagactgggagtcagttctttaattcaagtttttgttttgggctatttatggtgttctttcggtg 25658131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 39184071 - 39183985
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgat 297  Q
    |||||||||| | ||||||||| |||| |||||||||||| ||||||| ||||||||||||| |||  ||||   ||||||||||||||    
T  39184071 ttattttgggataagtagtggcgatgt-tggttatggataccgttttt-cagtggtcgtttcgtgatagagtctgttttaggtggtgat 39183985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 17853937 - 17853870
Alignment:
Q  215 ttttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt 283  Q
    ||||||| ||||||||||  |||  |||||||||||||||| ||||||||| ||||||| | |||||||    
T  17853937 ttttggggtgagtagtggtgatgggtggttatggatatcgt-ttttcagtgatcgtttcgtaaaggagt 17853870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 31742377 - 31742428
Alignment:
Q  215 ttttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggt 267  Q
    ||||||| ||||||||||| |||  || |||||||||||||||||||||||||    
T  31742377 ttttggggtgagtagtggcgatgggtg-ttatggatatcgttttttcagtggt 31742428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 50589264 - 50589023
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtg 155  Q
    ||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||     
T  50589264 gatcgcttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggcttatttagtgttctttcggtggaccagaggttgtgaggtggta 50589165  T
Q  156 gaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtg----attta-----------ttttgggttgagtagtggcaatgtat 240  Q
    |||  |||||||||||| ||||||| |||||||||||| ||||| ||| |||||    |||||           |||||||||||||||||||||||       
T  50589164 gaagttgattgatctttggaatagtagctcaacttaggtgatgcagacggagtgtttcatttagagggggttatttttgggttgagtagtggcaatggga 50589065  T
Q  241 ggttatggatatcgttttttcagtggtcgtttcttgaaggagt 283  Q
    |||||||||||||| |||||| ||||||| |||||| ||||||    
T  50589064 ggttatggatatcg-tttttcggtggtcggttcttgtaggagt 50589023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 299
Target Start/End: Original strand, 19598648 - 19598921
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||| |||| ||||||||||||||||  || |||||    
T  19598648 gtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttgggtttttatggtgttctttcggtggtccggaggt 19598747  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatt---------------tattttgggttgagta 228  Q
    |||||||||||||||  ||||||||||||||||||  ||||||||||| | ||| |||  |||||| ||               ||||||||||||||||    
T  19598748 tgtgaggtggtggaagttgattgatctttagaataacggctcaacttatgggatacggctagagtgtttcttttagaggggggttattttgggttgagta 19598847  T
Q  229 gtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagga----gtttttaggtggtgatgt 299  Q
    ||||| ||| |||||||||||| | ||||||| |||||| ||||| |||||||     |||||||||||||||||    
T  19598848 gtggcgatggatggttatggattttgtttttt-agtggtggtttcgtgaaggaatctatttttaggtggtgatgt 19598921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 42374175 - 42374335
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||||||||||||||||||| |||||||||||||||   ||||| |||||||| |||||||||||| ||||| ||||||||||  |||| |||     
T  42374175 gtctggtggaccgatcgcttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttgtttggcgttctttcggcataccggaga 42374274  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggac 203  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||| || |||| ||||    
T  42374275 ttgagaggtggtggaagctgattgatctttagaatagtggctcaactttggtgatgaggac 42374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 17033598 - 17033760
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttttg-gtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||||  |||||||||||| |  || |||    
T  17033598 gtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggcttttttttgtgttctttcggcgatcctgag 17033697  T
Q  142 gttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggaca 204  Q
    ||| ||||||| || || ||||||||||||||||||| ||||||||||| || |||| |||||    
T  17033698 gttatgaggtgatgcaagctgattgatctttagaataatggctcaactttggtgatgaggaca 17033760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 19598598 - 19598795
Alignment:
Q  13 attctctggtggaccg-gggtaaggggtgccc------------------gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttgg 93  Q
    |||||||||||||||| |||||||||||||||                  ||||||||| |||||||||||||||||||||||| ||||||| ||||||     
T  19598598 attctctggtggaccgagggtaaggggtgcccgtctggttgggtcctgaagtctggtgggccgatcgcttttgattcgagatcgagagtcagttctttga 19598697  T
Q  94 ctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaactta 191  Q
    |||||||||| ||||||| |||| ||||||||||||||||  || ||||||||||||||||||||  ||||||||||||||||||  |||||||||||    
T  19598698 ctcaagtttgattttgggtttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttagaataacggctcaactta 19598795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 4651792 - 4651922
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||| || |||||| ||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||| ||||||| ||| |||||    
T  4651792 gtctggggggccgatcacttttgattcgagatcgggagtcag-tctctggttctagtttggttttgggcttttttggtgttccttcggtggaccggaggt 4651890  T
Q  144 tgtgaggtggtggaaactgattgatctttaga 175  Q
    || | |||||||||| |||| |||||||||||    
T  4651891 tgcgcggtggtggaagctgaatgatctttaga 4651922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 38544807 - 38544664
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| | |||||| ||||||| ||| || | | |||     
T  38544807 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggaga 38544708  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctca 186  Q
    ||  || |||||||||  ||||||||||||||||||||||||||    
T  38544707 ttaagaagtggtggaagatgattgatctttagaatagtggctca 38544664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 172
Target Start/End: Original strand, 27102213 - 27102331
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtgg 153  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||  |  ||||||||||| | | ||||| | |||||||    
T  27102213 ccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtgg 27102312  T
Q  154 tggaaactgattgatcttt 172  Q
    ||||| |||| ||||||||    
T  27102313 tggaagctgaatgatcttt 27102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 34774882 - 34775007
Alignment:
Q  43 cgtctggtggaccgatcgcttttgattcgagatcgggagtcagctcttt-ggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccaga 140  Q
    ||||||||||||||||| |||||||| |||||||||||||||| | ||| ||||||||||| |||||||||||||| |||| ||||||||||| |   ||    
T  34774882 cgtctggtggaccgatcacttttgat-cgagatcgggagtcagtttttttggctcaagtttagttttgggctttttatggt-ttctttcggtgaattgga 34774979  T
Q  141 ggttgtgaggtggtggaaactgattgat 168  Q
    ||||| |||||||||||| |||||||||    
T  34774980 ggttgagaggtggtggaagctgattgat 34775007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 6583285 - 6583157
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    |||||||||||||||| |||||||||||||||||| |||||  ||||||| |||  |||||||||  ||||||| |||| ||||||||||| | | ||||    
T  6583285 gtctggtggaccgatcacttttgattcgagatcggcagtcaattctttggatcagttttggttttttgctttttatggt-ttctttcggtgaatcggagg 6583187  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | |||||||||||| |||||||||||||    
T  6583186 tcgagaggtggtggaagctgattgatcttt 6583157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 24658941 - 24659057
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | |||    
T  24658941 gtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggctttggttttgtgctctttcggtggatcggag 24659040  T
Q  142 gttgtgaggtggtggaa 158  Q
    || | ||||| ||||||    
T  24659041 gtcgagaggttgtggaa 24659057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 46814536 - 46814464
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||    
T  46814536 gtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggctttt 46814464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 31585829 - 31585758
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  31585829 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 31585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 41920464 - 41920535
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  41920464 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgggcttt 41920535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 46692888 - 46692817
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||| | |||||||||||    
T  46692888 gtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggcttt 46692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 5389480 - 5389419
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  5389480 ccgatcacttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggcttt 5389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 27031909 - 27031793
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    |||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||| | ||| ||| |||  ||| ||| |||||||||| | | |||    
T  27031909 gtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggctcaagttggttttagggattttgttttgtgctctttcggtggatcggag 27031810  T
Q  142 gttgtgaggtggtggaa 158  Q
    |||| ||||| ||||||    
T  27031809 gttgagaggttgtggaa 27031793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 10785510 - 10785455
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10785510 ttttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggcttttt 10785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7857665 - 7857737
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||| ||| ||||| | |||||| |||||    
T  7857665 gtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgctgaagttggtttttggcctttt 7857737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 32864628 - 32864517
Alignment:
Q  46 ctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggtt 144  Q
    ||||||| || ||| ||||| |||||||||||| |||| | |||||| |||||||||||||||||||||||| |||| ||||||  ||| | |||||||     
T  32864628 ctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagtttggttttgggctttttatggt-ttctttttgtggatcagaggtc 32864530  T
Q  145 gtgaggtggtgga 157  Q
    | |||||||||||    
T  32864529 gggaggtggtgga 32864517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 30685973 - 30685902
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||| |||| |||||| ||||||||| ||||||||||||||| |||||| |||||||| | |||||||||||    
T  30685973 gtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagttggcttttgggcttt 30685902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 40933878 - 40933987
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagaggttg 145  Q
    ||||| ||||||||||||||||| |||||||| |||||| | ||||| |||| |||| |||||  | |||||||||||| ||||| || || ||||||||    
T  40933878 tggtgaaccgatcgcttttgatttgagatcggaagtcagttatttggttcaattttgattttgaactttttttggtgtt-tttcgatggactagaggttg 40933976  T
Q  146 tgaggtggtgg 156  Q
     ||||||||||    
T  40933977 agaggtggtgg 40933987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 27905424 - 27905533
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||||||||||| |||||||||||||||| | ||| || ||||||  ||| |||| |||||||||   | ||||||  |||||||| ||| |||||    
T  27905424 gtctggtggaccgatcacttttgattcgagatcagaagttagttctttgattcatgttttgttttgggc---tatggtgt--tttcggtggaccggaggt 27905518  T
Q  144 tgtgaggtggtggaa 158  Q
    || ||||||||||||    
T  27905519 tgagaggtggtggaa 27905533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 2988138 - 2988058
Alignment:
Q  95 tcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttag 174  Q
    ||||||||| |||||||||||||| ||||||| |||| |  ||| ||||||||| |||||||||| |||| ||||||||||    
T  2988138 tcaagtttgattttgggctttttttggtgttccttcgatagaccggaggttgtgcggtggtggaagctgaatgatctttag 2988058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 24684547 - 24684431
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||| ||||||||||||  ||||| |||||| ||| |||| | |||||||||||  ||| ||| |||||||||| | | |||    
T  24684547 gtctggtgggccgatcacttttaattcgagatcggatgtcagttctttgactctagttggtttttgggcttttgttttgtgctctttcggtggatcggag 24684448  T
Q  142 gttgtgaggtggtggaa 158  Q
    || | ||||| ||||||    
T  24684447 gtcgcgaggttgtggaa 24684431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 28395103 - 28395026
Alignment:
Q  100 tttggttttgggctttt-ttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 176  Q
    ||||||||||||||||| |||||| ||||| |||| ||| ||||||||| | ||||||||  ||| ||||||||||||    
T  28395103 tttggttttgggcttttattggtgctcttttggtggaccggaggttgtgggttggtggaaggtgaatgatctttagaa 28395026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 30655572 - 30655613
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  30655572 gtctagtgggccgatcgcttttgattcgagatcgggagtcag 30655613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 5459173 - 5459213
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtca 84  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  5459173 gtctggtgggccgatcacttttgattcgagatcgggagtca 5459213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 16147585 - 16147641
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 118  Q
    ||||||||| | |||||||||||| ||||||| ||||||||| |||||| |||||||    
T  16147585 ttttgattcaatatcgggagtcagttctttgggtcaagtttgattttggactttttt 16147641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 9313346 - 9313307
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggct 95  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  9313346 gatcacttttgattcgagatcgggagtcagttctttggct 9313307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 46603404 - 46603458
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaa 98  Q
    ||||||||| ||  |||||||||||||||||||| ||||||| ||||||| ||||    
T  46603404 gtctggtgggccattcgcttttgattcgagatcgagagtcagttctttggttcaa 46603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 15840981 - 15840940
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    ||||||||| | |||| |||||||||||||||||||||||||    
T  15840981 gtctggtgggctgatcacttttgattcgagatcgggagtcag 15840940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 38564913 - 38564950
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggag 81  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  38564913 gtctcgtgggccgatcgcttttgattcgagatcgggag 38564950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 9081569 - 9081506
Alignment:
Q  49 gtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct 113  Q
    ||||| ||||| ||||||||||||||||||||| |||  |||| | ||||||||| |||||||||    
T  9081569 gtggatcgatcacttttgattcgagatcgggagccagtgctttag-tcaagtttgcttttgggct 9081506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 38548941 - 38548856
Alignment:
Q  216 tttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 299  Q
    |||||| ||||||||| | |||  |||||||| ||||||| ||||||||| ||||||| |||| ||||   ||||||||||||||||    
T  38548941 tttgggatgagtagtgacgatgggtggttatgaatatcgt-ttttcagtgatcgtttcgtgaaagagtctgttttaggtggtgatgt 38548856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 42374049 - 42374089
Alignment:
Q  45 tctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    |||||||||||| |  |||||||||||||||||||||||||    
T  42374049 tctggtggaccggttacttttgattcgagatcgggagtcag 42374089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 191
Target Start/End: Complemental strand, 48058723 - 48058576
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||||  ||||||||||||||| |||||||| |||||| | |||||||||||||||||||||| ||||| || |||||||||||||  |  |||||    
T  48058723 gtctggtgggtcgatcgcttttgatttgagatcggaagtcagttttttggctcaagtttggttttggccttttatgttgttctttcggtggtctggaggt 48058624  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaactta 191  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48058623 tgtgaggtggtggaagctgattgatctttagaatagtggctcaactta 48058576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 47457091 - 47456949
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||  || || ||    
T  47457091 gtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagtttagttatgggcttttatggtgttctttcggtggtccggaagt 47456992  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctca 186  Q
    ||||||||||||||| || ||||||||||||||||||| ||||    
T  47456991 tgtgaggtggtggaagctaattgatctttagaatagtgactca 47456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 193
Target Start/End: Original strand, 13311851 - 13312000
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||| |||||| ||||||||| || || ||||||    
T  13311851 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggctgttttggcgttctttcgatggactagaggt 13311950  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttagg 193  Q
    || |||||||||| | ||||||||| |||||||||||| |||| ||||||    
T  13311951 tgagaggtggtgggagctgattgatatttagaatagtgtctcagcttagg 13312000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 11379196 - 11379052
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||  ||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||||  |||  ||||||||    
T  11379196 gtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagttttggttttgggcttttttggtgttctt--ggttgaccagagg 11379099  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaact 189  Q
    ||   ||||||||||  ||||||||||||||||||| ||||||||||    
T  11379098 tttataggtggtggaggctgattgatctttagaataatggctcaact 11379052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 9428174 - 9428030
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||  |||||| |||||||||||||||| | |||||| |||| || || |||||||| ||||||| ||||||||||||||||||| |||||||||    
T  9428174 gtctggtgagccgatcacttttgattcgagatcagaagtcagttcttcggttctagtttggtcttgggctgttttggtgttctttcggtggaccagaggt 9428075  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaact 189  Q
    ||||| ||||||||| || |||||||| | ||||||||||||||||    
T  9428074 tgtgaagtggtggaagct-attgatctatggaatagtggctcaact 9428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 12480901 - 12481031
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttg 145  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||| ||  ||| |||    
T  12480901 tggtgggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttttaggtgttctttcggtggactggagattg 12481000  T
Q  146 tgaggtggtggaaactgattgatctttagaa 176  Q
    || |||||||||   |||||||| |||||||    
T  12481001 tgcggtggtggaggatgattgatttttagaa 12481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 46133347 - 46133214
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttgg-ttttgggc-ttttttggtgttctttcggtgtaccagag 141  Q
    ||||||||  |||||||||||||||| ||||||||||||||| ||| ||| |||||||||| |||||||| ||||||||||||| ||||||| ||| |||    
T  46133347 gtctggtgagccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggctttttttggtgttccttcggtggaccggag 46133248  T
Q  142 gttgtgaggtggtggaaactgattgatctttaga 175  Q
    |||| | ||||| |||| ||||||||||||||||    
T  46133247 gttgcgtggtgggggaagctgattgatctttaga 46133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 38485568 - 38485698
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||| | | ||| || |||||||||||||||||||||||||||| |||| || ||| |||||    
T  38485568 gtctggtgggccgatcacttttgattcgagatcgggagtcag-tatctggttctagtttggttttgggcttttttggtgttccttcgatggaccggaggt 38485666  T
Q  144 tgtgaggtggtggaaactgattgatctttaga 175  Q
    ||   |||||||||| |||| |||||||||||    
T  38485667 tgcacggtggtggaagctgaatgatctttaga 38485698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 47 - 172
Target Start/End: Original strand, 3478367 - 3478492
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||| |||||| |||||||||||||||||||||| || ||||||||||||| || |||||||||||| ||||||||||||||||| | | ||| | |     
T  3478367 tggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagattagttttgggctttgttggtgttctttcggtggatcggagatcga 3478466  T
Q  147 gaggtggtggaaactgattgatcttt 172  Q
    ||||||| |||| |||| ||||||||    
T  3478467 gaggtggcggaagctgaatgatcttt 3478492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 6584921 - 6585037
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | |||    
T  6584921 gtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcggag 6585020  T
Q  142 gttgtgaggtggtggaa 158  Q
    |||| ||||| ||||||    
T  6585021 gttgagaggttgtggaa 6585037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 6716805 - 6716678
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |||| ||||||||||| | | || |    
T  6716805 gtctggttggccgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggtcttgggttttttatggt-ttctttcggtggatc-gaag 6716708  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | |||||||||||| |||||||||||||    
T  6716707 tcgagaggtggtggaagctgattgatcttt 6716678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 22568168 - 22568043
Alignment:
Q  57 atcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgaggtggtg 155  Q
    ||||||||||||||| |||||||||| || | ||||| |||||||| | ||| || |||||| ||||||||||||| | |||  |||||| |||||||||    
T  22568168 atcgcttttgattcgtgatcgggagttagttttttggttcaagttttgattttggattttttaggtgttctttcggcggaccgaaggttgagaggtggtg 22568069  T
Q  156 gaaactgattgatctttagaatagtg 181  Q
     |||||||||||||||||||||||||    
T  22568068 aaaactgattgatctttagaatagtg 22568043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 34389974 - 34390090
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | | |||    
T  34389974 gtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggcttttattttgtgctctttcggtggatcggag 34390073  T
Q  142 gttgtgaggtggtggaa 158  Q
    || | ||||| ||||||    
T  34390074 gtcgagaggttgtggaa 34390090  T

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Target: chr7; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 42533321 - 42533194
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||||||| | |||| ||||||||||||||||||||||||   |||||||| |||||||| |||||||||||| |||| ||||||||||| | ||||||    
T  42533321 gtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtttgg-tttgggctttttatggt-ttctttcggtggatcagagg 42533224  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | |||||||||||| ||||||  |||||||    
T  42533223 tcgtgaggtggtggcaactgaacgatcttt 42533194  T

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Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 8745166 - 8745293
Alignment:
Q  45 tctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggt 143  Q
    |||||||| |||||| |||||||||||||||||||| |||| || |||| ||||||||||||||||||||||| |||| ||||||||||| | | |||||    
T  8745166 tctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttggttttgggctttttatggt-ttctttcggtggatcggaggt 8745264  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
     | ||||| |||||| |||  ||||||||    
T  8745265 cgagaggttgtggaagctgcatgatcttt 8745293  T

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Target: chr7; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 47325954 - 47325883
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||    
T  47325954 gtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttgactcaagttggtttttgggcttt 47325883  T

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Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 41089817 - 41089701
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| | ||||| |||||  ||| ||| |||||||||| | | |||    
T  41089817 gtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttgagcttttgttttgtgatctttcggtggatcggag 41089718  T
Q  142 gttgtgaggtggtggaa 158  Q
    || | ||||| ||||||    
T  41089717 gtcgcgaggttgtggaa 41089701  T

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Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 24324864 - 24324738
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagaggtt 144  Q
    |||||| ||||||  |||||||||||||||||||||||  ||||||||||||| |||||||||||||||||| |||| |||||| |||| | | |||||     
T  24324864 tggtgggccgatcaattttgattcgagatcgggagtcaattctttggctcaagttttggttttgggctttttatggt-ttctttaggtggatcggaggtc 24324766  T
Q  145 gtgaggtggtggaaactgattgatcttt 172  Q
    | | |||||||||| |||| ||||||||    
T  24324765 gaggggtggtggaagctgaatgatcttt 24324738  T

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Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 162
Target Start/End: Original strand, 1320806 - 1320925
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| |||||||||| | ||||| |||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||| | | |||    
T  1320806 gtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagttttggttttgggctttttatggt-ttctttcggtggatcggag 1320904  T
Q  142 gttgtgaggtggtggaaactg 162  Q
    || | |||| ||||| |||||    
T  1320905 gtcgagagggggtggcaactg 1320925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 3419722 - 3419654
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| | |||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  3419722 tggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttt 3419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 38306273 - 38306344
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| |||||| |||||||| | |||||||||||    
T  38306273 gtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagttggtttttgggcttt 38306344  T

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Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 10244195 - 10244265
Alignment:
Q  45 tctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||| ||||    
T  10244195 tctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttagtttttggccttt 10244265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 23983207 - 23983281
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 118  Q
    |||||||||  |||||| |||||||||||||||||||||||  || || ||||||||||||||||||| ||||||    
T  23983207 gtctggtgggtcgatcgtttttgattcgagatcgggagtcaattccttagctcaagtttggttttgggttttttt 23983281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 35745884 - 35745824
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||    
T  35745884 gatcacttttgattcgagatcggaagtcatctctttggctcaagttggtttttgggctttt 35745824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 9349761 - 9349832
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||||||||||  |||  || ||||||||| |||||||||||    
T  9349761 gtctggtgggccgatcacttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

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Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 26386240 - 26386125
Alignment:
Q  48 ggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtg 147  Q
    ||||| |||||||||||||||||||||||||||||  | ||||    |||||||| | ||| ||||  ||||||||||||||| || ||| || | || |    
T  26386240 ggtggtccgatcgcttttgattcgagatcgggagttcgttcttcaattcaagttttgatttaggctaatttggtgttctttcgatggaccggatgatgag 26386141  T
Q  148 aggtggtggaaactga 163  Q
    ||||||||||||||||    
T  26386140 aggtggtggaaactga 26386125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 162
Target Start/End: Original strand, 3867131 - 3867248
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt--ttggtgttctttcggtgtaccagaggtt 144  Q
    |||||| | |||| |||||||||||||| |||||||||| |||||| |||||||| | ||||||||||||  || ||| |||| ||||| | |||||||     
T  3867131 tggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggcttttgctttgtgctcttgcggtggatcagaggtc 3867230  T
Q  145 gtgaggtggtggaaactg 162  Q
    | |||||  |||||||||    
T  3867231 gcgaggttatggaaactg 3867248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 16954665 - 16954739
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttt 117  Q
    ||||||| |||||||| |||||| ||||||||||  |||||| |||||| ||||||||| |||||||||||||||    
T  16954665 gtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttgggcttttt 16954739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 36449113 - 36449210
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtggtggaa 158  Q
    |||| |||||||||  |||||||| ||||||| |||||||  ||||||| ||| ||||||| ||||||||||| | | ||||||| ||||||||||||    
T  36449113 tttttattcgagattaggagtcagttctttggttcaagttatgttttggacttattttggttttctttcggtggatcggaggttgagaggtggtggaa 36449210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 47456909 - 47456819
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagg----agtttttaggtggtgatg 298  Q
    |||||||||||||||| ||||||||   ||||||||||| | |||||||||||||| ||||| ||||||     |||||||||||||||||    
T  47456909 ttattttgggttgagtggtggcaattggtggttatggattttgttttttcagtggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 5860353 - 5860286
Alignment:
Q  48 ggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||| || ||||||||||||||||||||||||||||  |||||| | |||||| | |||||||||||    
T  5860353 ggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggcttt 5860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 1820071 - 1820013
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagttt 102  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||||||  ||||||||    
T  1820071 gtctggtggaccgatcgattttgattcgagatagggagtcaaatctttgattcaagttt 1820013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 33435132 - 33435178
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtt 101  Q
    ||||| ||||||||||||||||||||||||| |||||| ||||||||    
T  33435132 cgatcacttttgattcgagatcgggagtcagttctttgtctcaagtt 33435178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 190
Target Start/End: Original strand, 9107234 - 9107319
Alignment:
Q  105 ttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaatagtggctcaactt 190  Q
    |||||||||||||| ||||||||||||||     ||||||| |||||||||||   ||  ||| ||||||||||||||||||||||    
T  9107234 ttttgggctttttttgtgttctttcggtgggaaggaggttgagaggtggtggatgttgggtgaactttagaatagtggctcaactt 9107319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 27993605 - 27993568
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggag 81  Q
    |||||||||||||||| |||||||||||||||||||||    
T  27993605 gtctggtggaccgatcacttttgattcgagatcgggag 27993568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 37795019 - 37795072
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||||||||||||||||||| ||||||  ||||||| | |||||||||||    
T  37795019 ttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggcttt 37795072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 12546370 - 12546322
Alignment:
Q  150 gtggtggaaactgattgatctttagaatagtggctcaacttaggcgatg 198  Q
    |||||||||  |||||||||||||||||||||||||| |||||| ||||    
T  12546370 gtggtggaagttgattgatctttagaatagtggctcagcttaggtgatg 12546322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 9107355 - 9107401
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgtttt 258  Q
    |||||||||| ||||||||||| |||  |||||||||||||||||||    
T  9107355 ttattttgggatgagtagtggcgatgggtggttatggatatcgtttt 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 16828993 - 16828931
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagttt-ggttttgggcttttt 117  Q
    |||| |||||| ||||||||||  |||||| |||||| ||||||||| |||||||||||||||    
T  16828993 gatcacttttgtttcgagatcgaaagtcagttctttgactcaagttttggttttgggcttttt 16828931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 17802890 - 17802837
Alignment:
Q  39 tgcccgtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttg 92  Q
    |||| ||||||||| |||||| |||||||||||||||||| || ||||| ||||    
T  17802890 tgccggtctggtgggccgatcacttttgattcgagatcggaagccagctttttg 17802837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 25153232 - 25153265
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcg 77  Q
    |||||||||||||||| |||||||||||||||||    
T  25153232 gtctggtggaccgatcacttttgattcgagatcg 25153265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 44353623 - 44353562
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| ||||||||| ||||||||||||||| |||||| || | ||| | |||||||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggcttt 44353562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 46262188 - 46262151
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggag 81  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  46262188 gtctggtgggccgatcacttttgattcgagatcgggag 46262151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 25160827 - 25160867
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtca 84  Q
    |||||||||||||||  |||||||||||||||||| |||||    
T  25160827 gtctggtggaccgattacttttgattcgagatcggaagtca 25160867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 12296187 - 12296352
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||  |||| ||||||||||||||||||   |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  12296187 gtctggtgtgccgagcgcttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggcttttttggtgttctttcggtggaccggaggt 12296286  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtg 209  Q
    |||| |||||||||| ||| ||| |||||||| ||||||||||||||||| |||| |||| |||||    
T  12296287 tgtgtggtggtggaagctggttgttctttagagtagtggctcaacttaggtgatgaggacggagtg 12296352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 28966890 - 28967026
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggt 154  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||  || ||||||||||||||||    
T  28966890 cgatcgtttttgattcgagattgggagtcagttctttggctcaagtttggttttgggcttttaggatgttctttcggtggtccggaggttgtgaggtggt 28966989  T
Q  155 ggaaactgattgatctttagaatagtggctcaactta 191  Q
    |||| ||||||||||| ||||||||||||||| ||||    
T  28966990 ggaagctgattgatctctagaatagtggctcatctta 28967026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 38929839 - 38929986
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||| ||| |||||| ||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||  || |||||    
T  38929839 gtctgctgggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggcttttatggtgttctttcggtgatccggaggt 38929938  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaactta 191  Q
    |||||||||||||||  |||||||||||| |||||||  |||||||||    
T  38929939 tgtgaggtggtggaagttgattgatctttggaatagtcactcaactta 38929986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 35800501 - 35800629
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||| |||||||||||||||||||||||||| |||||| ||||||  || |||||||||||||||||||||||||||||||||||| ||| |||||    
T  35800501 gtctggtgaaccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggcttttttggtgttctttcggtggaccggaggt 35800600  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
    |  | |||||||||| |||| ||||||||    
T  35800601 ttcgcggtggtggaacctgaatgatcttt 35800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 77 - 200
Target Start/End: Complemental strand, 21983857 - 21983734
Alignment:
Q  77 gggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 176  Q
    ||||||||| |||||||||||||||| ||| ||||||||| ||||||||||||||||  || ||||||||||||||||||||  ||||||||||||||||    
T  21983857 gggagtcagttctttggctcaagtttagttatgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagttgattgatctttagaa 21983758  T
Q  177 tagtggctcaacttaggcgatgcg 200  Q
    ||||| |||| |||||| ||||||    
T  21983757 tagtgactcagcttaggggatgcg 21983734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 16501746 - 16501858
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt-ggtg-ttctttcggtgtaccagaggtt 144  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||| ||| ||| ||    
T  16501746 tggtgggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggcttttttaggtgtttctttcggtggaccggagatt 16501845  T
Q  145 gtgaggtggtgga 157  Q
    ||| |||||||||    
T  16501846 gtgcggtggtgga 16501858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 46698854 - 46698712
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| ||| ||||||||||||||  |   ||||    
T  46698854 gtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgtttaggtgttctttcggtagattggagg 46698755  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctc 185  Q
    ||   | ||||||||| |||||| |||||||||||||||||||    
T  46698754 tttaaaagtggtggaagctgattcatctttagaatagtggctc 46698712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 53823490 - 53823362
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||  | |  |||    
T  53823490 gtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggttttttatggt-ttctttcggttgatcgaagg 53823392  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | ||||||||||||  ||||||||||||    
T  53823391 tcgagaggtggtggaagttgattgatcttt 53823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 25753184 - 25753257
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    |||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  25753184 gtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggcttttt 25753257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 41118024 - 41117901
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggt 154  Q
    |||| |||||||||||||||||| ||| || |||||||||||| || ||||||||||||||| |||| |||||||| || | ||||||| | ||||||||    
T  41118024 gatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggt-ttctttcgatggatcagaggtcgagaggtggt 41117926  T
Q  155 ggaaactgattgatctttagaatag 179  Q
    |||| |||| |||||||| ||||||    
T  41117925 ggaagctgaatgatctttcgaatag 41117901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 19673113 - 19673201
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtg 133  Q
    ||||||||||||  || ||||| |||||||||| |||||||| |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  19673113 gtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtttagttttgggttttgttggtgttctttcggtg 19673201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 22811229 - 22811156
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||| ||||||  |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  22811229 gtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtttggttttaggcttttt 22811156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 19815293 - 19815161
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttg----gttttgggcttttttggtgttctttcggtgtaccag 139  Q
    |||||||||||||||  ||||| |||||||||| |||||||| ||||||||||||||||     |||||||| ||  ||||||||||||||||| ||| |    
T  19815293 gtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtttaattagttttgggtttgattggtgttctttcggtggaccgg 19815194  T
Q  140 aggttgtgaggtggtggaaactgattgatcttt 172  Q
    |||| | ||| |||||||| || | ||||||||    
T  19815193 aggtcgagagatggtggaagctaaatgatcttt 19815161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 161
Target Start/End: Complemental strand, 24740172 - 24740054
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct-tttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||||||| | |||| |||||||||||||| | ||||| |||| |||||||||||||| ||||||  |||||||| ||| | | ||||    
T  24740172 gtctggtgggccgatcgcttataattcaagatcgggagtcagttatttggttcaaatttggttttgggctctttttgtcgttctttccgtggatcggagg 24740073  T
Q  143 ttgtgaggtggtggaaact 161  Q
    ||||| |||||| ||||||    
T  24740072 ttgtgcggtggtagaaact 24740054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 38637301 - 38637174
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    |||||| || |||||| ||||||||||||||||||||||||  ||||||||| ||| | ||||||||||||||| |||| |||||| |||| | | ||||    
T  38637301 gtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaag-taggttttgggctttttatggt-ttcttttggtggatcggagg 38637204  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | |||||||||||| |||| ||||||||    
T  38637203 tcgagaggtggtggaagctgaatgatcttt 38637174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 39421080 - 39420958
Alignment:
Q  46 ctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggtt 144  Q
    ||||||| |||||| ||||||||||||||||||||||||  || || | |||  |||||||||||||||||| |||| || |||||||| | | ||| |     
T  39421080 ctggtgggccgatcacttttgattcgagatcgggagtcaattccttagatcagttttggttttgggctttttatggt-ttttttcggtggatcggagatc 39420982  T
Q  145 gtgaggtggtggaaactgattgat 168  Q
    | ||||||||||||||||||||||    
T  39420981 gagaggtggtggaaactgattgat 39420958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 6600014 - 6599932
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct-tttttggtgttc 125  Q
    ||||||||| |||||||||||||||| ||||||||||||| | ||||||  |||||||| |||||||||| ||| ||||||||    
T  6600014 gtctggtgggccgatcgcttttgattagagatcgggagtcggttctttgattcaagttttgttttgggctatttatggtgttc 6599932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 21387273 - 21387159
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||||||||||| |||||||||||||||||| |||||| |||| |  ||||||||   ||||||||  |||||||||| ||| ||| ||| |||||    
T  21387273 gtctggtggaccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtttttatttgggctaatttggtgttcgttcagtggaccggaggt 21387174  T
Q  144 tgtgaggtggtggaa 158  Q
    || || ||| |||||    
T  21387173 tgagatgtgatggaa 21387159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 43374120 - 43374031
Alignment:
Q  87 tctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatctttagaa 176  Q
    ||||||| ||||||||| ||| | | ||||||||||||||||| ||| | | ||||||| | |||||||||| |||||||||||||||||    
T  43374120 tctttggttcaagtttgatttcgaggttttttggtgttctttcagtggatcggaggttgcgcggtggtggaagctgattgatctttagaa 43374031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 43077000 - 43077126
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagct---ctttggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccagaggttgtgag 149  Q
    ||||||| |||| ||||||||||| |||||| ||   |||||| ||||||||| |||||||||||||| ||||||||||||||  | | || |||||  |    
T  43077000 ccgatcgttttttattcgagatcgagagtcaacttttctttggttcaagtttgcttttgggcttttttaggtgttctttcggttgatcggatgttgtacg 43077099  T
Q  150 gtggtggaaactgattgatctttagaa 176  Q
    ||||||||  ||||| |||||||||||    
T  43077100 gtggtggaggctgatcgatctttagaa 43077126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 8255039 - 8255129
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtg 133  Q
    ||||||||| |||||| |||||||| ||||||| | |||||| |||||| |||||||| | ||||||||||| ||| ||| ||||||||||    
T  8255039 gtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtg 8255129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 8268457 - 8268547
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtg 133  Q
    ||||||||| |||||| |||||||| ||||||| | |||||| |||||| |||||||| | ||||||||||| ||| ||| ||||||||||    
T  8268457 gtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttgggctttgttttgtgctctttcggtg 8268547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 38930021 - 38930094
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagttt 285  Q
    |||||||||||||||||||| | |||| |||||||| || | |||||||||||||| ||||| |||||| ||||    
T  38930021 ttattttgggttgagtagtgacgatgtgtggttatgaattttgttttttcagtggtggtttcgtgaaggggttt 38930094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 49747539 - 49747612
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||  |||||| ||||||||| ||||||| ||||||| ||||| | ||||||||||||||| |||||||    
T  49747539 gtctggtgagccgatcacttttgatttgagatcgagagtcagttcttttgatcaagtttggttttgagcttttt 49747612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 2061807 - 2061679
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| | |||| ||||||||||||||| | ||||||| ||||||| |||  |||| ||||||||||||   |  ||||||||||| | | |||||    
T  2061807 gtctggtgggctgatcacttttgattcgagattgagagtcagttctttggatcagttttgattttgggcttttgatgatttctttcggtggatcggaggt 2061708  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
     | ||||||||||||  ||| ||||||||    
T  2061707 cgagaggtggtggaagttgaatgatcttt 2061679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 4305737 - 4305808
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||||  ||||| |||||||||||||||||||||| || |||||| |||||||| | |||| ||||||    
T  4305737 gtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtctcaagttggtttttaggcttt 4305808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 35341390 - 35341335
Alignment:
Q  61 cttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||||||| ||||||||| |||||||||||||||||||||| | |||||| |||||    
T  35341390 cttttgatccgagatcggaagtcagctctttggctcaagttggtttttggcctttt 35341335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 12296370 - 12296460
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagga----gtttttaggtggtgatgt 299  Q
    |||||||||| ||||||||||| |||  ||||||||||||||| |||||||||||||| |||   |||||    ||||||||||||||||||    
T  12296370 ttattttgggatgagtagtggcgatgggtggttatggatatcg-tttttcagtggtcgcttcggaaaggagtctgtttttaggtggtgatgt 12296460  T

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Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 21983708 - 21983654
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtgg 266  Q
    ||||||||||||||||||||||||||  ||||||||||| | |||||||| ||||    
T  21983708 ttattttgggttgagtagtggcaatgggtggttatggattttgttttttccgtgg 21983654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 2825799 - 2825867
Alignment:
Q  48 ggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||| ||||||  ||||||||||||||||||| ||| |||||||||||||  | | ||||||||||||    
T  2825799 ggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggctttt 2825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 31050731 - 31050659
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| |||||| |||||||||||||||||| ||| || ||||||| |  |||| | ||||||||||||    
T  31050731 gtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagttggtttttgggctttt 31050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 46487465 - 46487536
Alignment:
Q  211 tttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt 283  Q
    |||||||| || ||||||||||| || | |||||||| |||||| |||||||||||||| ||| |||||||||    
T  46487465 tttattttaggatgagtagtggcgatatgtggttatgaatatcg-tttttcagtggtcgcttcatgaaggagt 46487536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 48098362 - 48098418
Alignment:
Q  61 cttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    |||||| |||||||||||||||||| |  |||| | |||||||||||||||||||||    
T  48098362 cttttgtttcgagatcgggagtcagtttgttggattaagtttggttttgggcttttt 48098418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 21988045 - 21988007
Alignment:
Q  13 attctctggtggaccgggg-taaggggtgcccgtctggt 50  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  21988045 attctctggtggaccgggggtaaggggtgcccgtctggt 21988007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 30167622 - 30167576
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtt 101  Q
    ||||| ||||||||||||||||||||||| | |||||| ||||||||    
T  30167622 cgatcacttttgattcgagatcgggagtcggttctttgactcaagtt 30167576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 30964454 - 30964520
Alignment:
Q  45 tctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 111  Q
    |||| ||| |||||| ||||||||||| ||||||||||| | |||||| |||||||| | |||||||    
T  30964454 tctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 38929789 - 38929827
Alignment:
Q  13 attctctggtggaccgggg-taaggggtgcccgtctggt 50  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  38929789 attctctggtggaccgggggtaaggggtgcccgtctggt 38929827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 16833078 - 16833017
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    |||| |||||||||||||||||| |||||  |  |||| |||||||||| ||||||||||||    
T  16833078 gatcacttttgattcgagatcggaagtcattttgttggatcaagtttggatttgggcttttt 16833017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 36962684 - 36962628
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtt 101  Q
    ||||||||| |||||  |||||||||||||||| |||||||| |||||| ||||||||    
T  36962684 gtctggtgggccgattacttttgattcgagatcaggagtcag-tctttgactcaagtt 36962628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 39041343 - 39041302
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  39041343 gtctggtgggccgatcacttttgattcgagatcaggagtcag 39041302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 40813850 - 40813813
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggag 81  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  40813850 gtctggtgggccgatcacttttgattcgagatcgggag 40813813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 47945722 - 47945873
Alignment:
Q  48 ggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtg 147  Q
    ||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||  || ||| |||||    
T  47945722 ggtgggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggcttttatggtgttctttcggtggtccggagattgtg 47945821  T
Q  148 aggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgc 199  Q
    |||||||||||  | |||||||||| |||||||||||||  ||||| |||||    
T  47945822 aggtggtggaagttaattgatcttttgaatagtggctcagtttaggggatgc 47945873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 5556582 - 5556721
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||  ||||||||||||||| ||| ||||    
T  5556582 gtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttttcaggtgttctttcggtggaccggagg 5556681  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtgg 182  Q
    ||  |||||||||||  ||| ||||||||||||| |||||    
T  5556682 tttagaggtggtggaggctggttgatctttagaaaagtgg 5556721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 1652950 - 1652823
Alignment:
Q  49 gtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtga 148  Q
    |||| |||||| |||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||  |     
T  1652950 gtgggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttttttggtgttctttcggtggaccggaggttaagc 1652851  T
Q  149 ggtggtggaaactgattgatctttagaa 176  Q
    ||||| ||||  ||| ||||||||||||    
T  1652850 ggtggcggaagttgaatgatctttagaa 1652823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 27398970 - 27399102
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc-ttttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||  | |||||||| |||||||| || |||||||| | ||||| |||||||||||||||||| |||||||||||||||| |||| ||||||||    
T  27398970 gtctggtggcacaatcgctttagattcgaggtcaggagtcagttatttggttcaagtttggttttgggctttttttggtgttcttttggtggaccagagg 27399069  T
Q  143 ttgtgaggtggtggaaactgattgatctttaga 175  Q
    ||| ||||||||||   |||| |||||||||||    
T  27399070 ttgagaggtggtggttgctgaatgatctttaga 27399102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 33144018 - 33143891
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagag 141  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| || | ||||||||||||| |||| ||||||||||| | |||||    
T  33144018 gtctggtggatcgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctttttatggt-ttctttcggtggatcagag 33143920  T
Q  142 gttgtgaggtggtggaaactgattgatct 170  Q
    || | |||||||||||| |||||||||||    
T  33143919 gtcgcgaggtggtggaagctgattgatct 33143891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 823494 - 823375
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagaggttgtgaggtg 152  Q
    |||||| ||||||||||||||||| ||||||| | |||   |||||||| ||||||||||| ||||||||||||||||||  ||||||||||| ||||||    
T  823494 ccgatcacttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtg 823395  T
Q  153 gtggaaactgattgatcttt 172  Q
    | |||| |||| ||||||||    
T  823394 gcggaagctgaatgatcttt 823375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 30935456 - 30935326
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtg-ttctttcggtgtaccagaggttg 145  Q
    |||||| | ||||||||||||||| ||||||||||| || | ||||| ||||||||||||||| |||||||||||| ||||||| | | ||| ||| ||     
T  30935456 tggtgggctgatcgcttttgattcaagatcgggagttagttatttggttcaagtttggttttgagcttttttggtgtttctttcagcggaccggagatta 30935357  T
Q  146 tgaggtggtggaaactgattgatctttagaa 176  Q
     | |||||||||| |||| ||||||||||||    
T  30935356 cgcggtggtggaagctgaatgatctttagaa 30935326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 43012387 - 43012503
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | ||||| |||||  ||| ||| |||||||||| | |||||    
T  43012387 gtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagcttttgttttgtgctctttcggtgaatcagag 43012486  T
Q  142 gttgtgaggtggtggaa 158  Q
    || | ||||| ||||||    
T  43012487 gtcgcgaggttgtggaa 43012503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 19176514 - 19176586
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | ||||||||||||    
T  19176514 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttt 19176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 25594577 - 25594454
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtg 155  Q
    ||||||||||||||| ||||||| ||| |  ||||||| ||||| |||| |||||||||||||||||||||||| |||           |||| ||||||    
T  25594577 gatcgcttttgattctagatcggaagttaattctttggttcaagattggctttgggcttttttggtgttctttcagtg-----------gtgatgtggtg 25594489  T
Q  156 gaaactgattgatctttagaatagtggctcaactt 190  Q
    ||| | |||||||||||||||||||||||||||||    
T  25594488 gaagcggattgatctttagaatagtggctcaactt 25594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 17550969 - 17551040
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  17550969 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 17551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 9584122 - 9584013
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    |||||||||| ||||| ||||||||||||||||||||||||| |||||| |||||| | | |||||||||||  ||| ||| |||||||||| | | |||    
T  9584122 gtctggtggatcgatcacttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggcttttgttttgtgatctttcggtggatcggag 9584023  T
Q  142 gttgtgaggt 151  Q
    |||| |||||    
T  9584022 gttgcgaggt 9584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 23328416 - 23328303
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagaggtt 144  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| | ||||| |||||  ||| ||| |||||||||| | | |||||     
T  23328416 tggtggaccgatcacttttgattcgagatcgggagttagctttttggctcaagttggtttttgagcttttgttttgtgctctttcggtggatcggaggtc 23328317  T
Q  145 gtgaggtggtggaa 158  Q
    | ||||| ||||||    
T  23328316 gagaggttgtggaa 23328303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 47 - 117
Target Start/End: Original strand, 37123397 - 37123467
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    |||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||||    
T  37123397 tggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggcttttt 37123467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 39021342 - 39021273
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||||| |||||| ||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||    
T  39021342 tggtgggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggctttt 39021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 40023641 - 40023541
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    |||||||||||||||| |||||||||||||||||||||||   ||||||||| ||||| | |||||||||||  ||| ||| |||||||||| | |||||    
T  40023641 gtctggtggaccgatcacttttgattcgagatcgggagtcgattctttggcttaagttggtttttgggcttttgttttgtgctctttcggtggatcagag 40023542  T
Q  142 g 142  Q
    |    
T  40023541 g 40023541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 14193952 - 14194027
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag--tttggttttgggcttttt 117  Q
    |||||| ||||||||| ||||||||||||||| ||||||| | |||||||||||||  ||||||||||||||||||    
T  14193952 gtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtttttggttttgggcttttt 14194027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 45398808 - 45398880
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||  | ||||| | ||||||||||||    
T  45398808 gtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttgggctttt 45398880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 14879447 - 14879576
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttt-tggtgttctttcggtgtaccagag 141  Q
    ||||||||| |||||| ||||||||||||||||||||||| | || |||| ||||| ||||||||||| |||||| |||| ||||||||||| |   |||    
T  14879447 gtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagttttggttttggactttttatggt-ttctttcggtggataggag 14879545  T
Q  142 gttgtgaggtggtggaaactgattgatcttt 172  Q
    || | |||||||||||| || | ||||||||    
T  14879546 gtcgagaggtggtggaagcttaatgatcttt 14879576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 38488835 - 38488940
Alignment:
Q  72 agatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatct 170  Q
    ||||||||||||||  |||||  ||||||||||||||||||||| || ||||||||||||||| ||| |||||||   ||| |||||  ||| |||||||    
T  38488835 agatcgggagtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggttgcacggttgtggaggctggttgatct 38488934  T
Q  171 ttagaa 176  Q
    ||||||    
T  38488935 ttagaa 38488940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 2392573 - 2392504
Alignment:
Q  46 ctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||||||||| ||||||||||||||| || |||||| |||||| || ||||| | |||||||||||    
T  2392573 ctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttgggcttt 2392504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 25594417 - 25594328
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaaggagt---ttttaggtggtgatgt 299  Q
    |||| ||||| ||||||||||| |||  ||||| |||||||||||||||||||||||||||  |||||||||   |||||||| |||||||    
T  25594417 ttatcttgggatgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtcgttttgtgaaggagtatgttttaggtagtgatgt 25594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 30127274 - 30127333
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctct-ttggctcaagttt 102  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  30127274 gtctggtgagccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagttt 30127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 14755334 - 14755260
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttgg-ctcaagtttggttttgggcttttt 117  Q
    ||||||||| |||||| |||||||||| |||||||||||||| |||||||  || || |||| ||||||||||||    
T  14755334 gtctggtgggccgatcacttttgattcaagatcgggagtcagttctttggtttcgaggttggatttgggcttttt 14755260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 2394320 - 2394255
Alignment:
Q  46 ctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 111  Q
    |||||||||||||| ||||||||||||||| || |||||| |||||| || ||||| | |||||||    
T  2394320 ctggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 20611813 - 20611866
Alignment:
Q  62 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||||||||||||||||||||| |||||| || ||||| | |||||||||||    
T  20611813 ttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggcttt 20611866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 46358428 - 46358315
Alignment:
Q  71 gagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatct 170  Q
    ||||| ||||||||  ||||| | | |||||||| |||||||| ||||| ||||||||| ||| |   ||||||| |||||||||||| || ||||||||    
T  46358428 gagatggggagtcacttctttagtttaagtttggctttgggctgttttgatgttctttcagtggattggaggttgagaggtggtggaagcttattgatct 46358329  T
Q  171 ttagaatagtggct 184  Q
    |  ||||| |||||    
T  46358328 tgggaataatggct 46358315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 34475823 - 34475783
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtca 84  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  34475823 gtctggtgggccgatcacttttgattcgagatcgggagtca 34475783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 20710777 - 20710740
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggag 81  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  20710777 gtctggtgggccgatcacttttgattcgagatcgggag 20710740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 31424248 - 31424289
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    ||||||| | ||| ||||||||||||||||||||||||||||    
T  31424248 gtctggtaggccggtcgcttttgattcgagatcgggagtcag 31424289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 15906698 - 15906872
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtg-ttctttcggtgtaccagagg 142  Q
    ||||||||| |||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||| ||| ||||||| ||| ||||||||    
T  15906698 gtctggtgggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctgatttagtgtttctttcagtggaccagagg 15906797  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtgatttattt 217  Q
    ||  ||||||||||||  |||||||| | ||||||||| |||||||||||| |||| |||||| ||| |||||||    
T  15906798 ttaagaggtggtggaagatgattgatttatagaatagtagctcaacttaggtgatgaggacagtgtgttttattt 15906872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 17720771 - 17720610
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||| | |||||||||||||||| ||||||||||||| ||||||| |||| || ||||||||||| ||||||||||||||||||| ||  |||||||     
T  17720771 tggtgggctgatcgcttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggctgttttggtgttctttcggtggacttgaggttga 17720673  T
Q  147 gaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcggacagagtg 209  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| | |||| |||| |||||    
T  17720672 gaggtggtggaagttgattgatctttagaatagtggctcaaattaagtgatgaggacggagtg 17720610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 30236197 - 30236064
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctt-ttttggtgttctttcggtgtaccagagg 142  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| | |||||| |||||||     
T  30236197 gtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctttttttggtgttgtatcggtggaccagaga 30236098  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaa 176  Q
    ||| |  ||||||||| |||||||||||||||||    
T  30236097 ttgcgcagtggtggaagctgattgatctttagaa 30236064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 35062469 - 35062600
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| ||||||| |||||||||||||||| ||||||| ||| | | || |||||||||||||||||||| ||||||| ||||||| | |||||||    
T  35062469 gtctggtgggccgatcgattttgattcgagatcgagagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggt 35062568  T
Q  144 tgtgaggtggtggaaactgattgatctttaga 175  Q
    || | ||||||||||  ||| |||||||||||    
T  35062569 tgcgcggtggtggaaggtgaatgatctttaga 35062600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 17657060 - 17656943
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtgg 153  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| ||||||||||| | | ||||| |  ||||||    
T  17657060 cgatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttttatggt-ttctttcggtggatcggaggtcgataggtgg 17656962  T
Q  154 tggaaactgattgatcttt 172  Q
    ||||| |||| ||||||||    
T  17656961 tggaagctgaatgatcttt 17656943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 41791322 - 41791209
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggt 154  Q
    ||||||||||||||||||||||| ||||||  ||||||| |||||||| ||||||| ||||||||||||| ||||| || || |||||||| | ||||||    
T  41791322 cgatcgcttttgattcgagatcgagagtcacttctttggttcaagtttagttttggacttttttggtgttatttcgatggactagaggttgcgcggtggt 41791223  T
Q  155 ggaaactgattgat 168  Q
    |||| | |||||||    
T  41791222 ggaagcggattgat 41791209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 10552280 - 10552410
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| ||||||||||||||||| |||||||||||||| ||| ||| || |||||||||||| ||||||| ||||||  ||||| | ||| |||||    
T  10552280 gtctggtgggccgatcgcttttgattctagatcgggagtcagttctctggttctagtttggttttgtgctttttaggtgttacttcgggggacc-gaggt 10552378  T
Q  144 tgtgaggtggtggaaactgattgatctttaga 175  Q
    || |  ||||||||| |||| |||||||||||    
T  10552379 tgcgttgtggtggaagctgaatgatctttaga 10552410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 10248619 - 10248494
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttg 145  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||  ||||| | |||| |||||| |||| | | ||||  |    
T  10248619 tggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtttggttttttgctttatatggt-ttcttttggtggatcggaggccg 10248521  T
Q  146 tgaggtggtggaaactgattgatcttt 172  Q
     |||||||||||| |||||||||||||    
T  10248520 cgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 32945760 - 32945683
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtg 133  Q
    |||| ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||| |||||||||||||    
T  32945760 gatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggcttttttgatgttctttcggtg 32945683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 24995464 - 24995393
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  24995464 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 24995393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 32066364 - 32066256
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||||||| ||| |||| | ||||||||||| | | ||| ||||||||||   ||||||    
T  32066364 gtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggctttgtgttgtgctctttcggtggttcagagg 32066265  T
Q  143 ttgtgaggt 151  Q
    ||| |||||    
T  32066264 ttgcgaggt 32066256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 15821448 - 15821330
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt--tttggtgttctttcggtgtaccagag 141  Q
    ||||||||| | |||| |||||||||||||||||||||||||||||||| || | ||| | |||||||||||  ||| ||| |||||| ||| | |||||    
T  15821448 gtctggtgggctgatcacttttgattcgagatcgggagtcagctctttgacttatgttggtttttgggcttttgttttgtgctctttcagtggatcagag 15821349  T
Q  142 gttgtgaggtggtggaaac 160  Q
    || | ||||| ||||||||    
T  15821348 gtcgagaggttgtggaaac 15821330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 31207431 - 31207364
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttggg 111  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||||||    
T  31207431 gtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 12198138 - 12198064
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 118  Q
    |||||||||||||||| ||||| |||  | || ||||||||| ||||||||||||||||||||||| ||||||||    
T  12198138 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagctttttt 12198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 12442566 - 12442492
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 118  Q
    |||||||||||||||| ||||| |||  | || ||||||||| ||||||||||||||||||||||| ||||||||    
T  12442566 gtctggtggaccgatcacttttaattgaaaattgggagtcagttctttggctcaagtttggttttgagctttttt 12442492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 36630849 - 36630921
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt 116  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||| |||||| ||| |||||| ||||||||||||    
T  36630849 gtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggctttt 36630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Original strand, 9519511 - 9519582
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||| |||| ||||||  |||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  9519511 gtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 9519582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 34389074 - 34389003
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| |||||| ||||||||||||||||  ||||||| |||||| |||||||| | |||||||||||    
T  34389074 gtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggcttt 34389003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 16457520 - 16457459
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||| | |||| ||||||    
T  16457520 ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggcttt 16457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 37986927 - 37986856
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| || |||  |||||||||||||||||||||||| |||||| |||||||| | ||||| |||||    
T  37986927 gtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagttggtttttgtgcttt 37986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 41893469 - 41893399
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    ||||||||| || | | ||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||    
T  41893469 gtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaag-ttgtttttgggcttt 41893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 15906882 - 15906949
Alignment:
Q  212 ttattttgggttgagtagtggcaatgtatggttatggatatcgttttttcagtggtcgtttcttgaagg 280  Q
    |||||||||| |||||||||||||  | |||||||||||| |  |||||||||||||||||| ||||||    
T  15906882 ttattttgggatgagtagtggcaacatgtggttatggata-ctgtttttcagtggtcgtttcgtgaagg 15906949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 20138448 - 20138509
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| ||||||||| ||||||||||||||| |||||| || | ||| | |||||||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggcttt 20138509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 6570 - 6727
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    |||||||| | ||||| |||||||||| |||| || ||| || |||||||||||||||||||||| ||||||||| ||||||||||||||  | ||||||    
T  6570 gtctggtgcaacgatctcttttgattcaagattggtagttagttctttggctcaagtttggtttttggctttttttgtgttctttcggtggtctagaggt 6669  T
Q  144 tgtgaggtggtggaaactgattgatctttagaatagtggctcaacttaggcgatgcgg 201  Q
    |||| || |||||||  |||||| |||||||||||||||||||||||||| |||||||    
T  6670 tgtgtggaggtggaagatgattggtctttagaatagtggctcaacttaggggatgcgg 6727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 176
Target Start/End: Original strand, 9224053 - 9224186
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttt-ttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| | |||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||| |||||| |||||||||| ||| ||||    
T  9224053 gtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttggttcagttttggttttgggcttttattggtgctctttcggtgcaccggagg 9224152  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaa 176  Q
    ||||| |||||||||| |||| ||||||||||||    
T  9224153 ttgtgcggtggtggaagctgaatgatctttagaa 9224186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 13098629 - 13098483
Alignment:
Q  55 cgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggt 154  Q
    ||||| ||| |||||| |||| |||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||  |  ||||||||| || |||    
T  13098629 cgatctcttctgattcaagattgggagttagttctttggctcaagtttggtttttggctttttttgtgttctttcggtggtctggaggttgtgtggaggt 13098530  T
Q  155 ggaaactgattgatctttagaatagtggctcaacttaggcgatgcgg 201  Q
    ||||  |||||||||||||||||||||||||| |||||| |||||||    
T  13098529 ggaagatgattgatctttagaatagtggctcagcttaggggatgcgg 13098483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 176
Target Start/End: Complemental strand, 26534788 - 26534652
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctt---tggctcaagtttggttttgggctttttt-ggtgttctttcggtgtaccag 139  Q
    ||||||||| |||||| ||||||||||||||| ||||||||| ||||   ||| |||||||||||||||||||||||| ||||||||||||||| |||      
T  26534788 gtctggtgggccgatcacttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttttttaggtgttctttcggtggaccga 26534689  T
Q  140 aggttgtgaggtggtggaaactgattgatctttagaa 176  Q
    |||||||| |||||||||| |||||||||||||||||    
T  26534688 aggttgtgcggtggtggaagctgattgatctttagaa 26534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 26216088 - 26215960
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||| || |||  ||||||||||||||||||||||||||||| |||| ||| ||| |    
T  26216088 gtctggtgggccgatcacttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggcttttttggtgttcttttggtggaccggagat 26215989  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
    || | |||||||||| |||||||||||||    
T  26215988 tgcgcggtggtggaagctgattgatcttt 26215960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 21266127 - 21266257
Alignment:
Q  46 ctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttg 145  Q
    ||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||||||||||||||| |||||||||||| |||| ||||||| |||    
T  21266127 ctggtgggccgatcgcttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggctttgttggtgttcttttggtggaccagagattg 21266226  T
Q  146 tgaggtggtggaaactgattgatctttagaa 176  Q
    || |||||||||  || ||||||||| ||||    
T  21266227 tgcggtggtggaggctaattgatcttcagaa 21266257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 44 - 172
Target Start/End: Complemental strand, 32935408 - 32935280
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggt 143  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||| |||||| ||||||| ||||||||||||||   || ||||    
T  32935408 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttggactcaagtttgattttggacttttttagtgttctttcggtggttcaaaggt 32935309  T
Q  144 tgtgaggtggtggaaactgattgatcttt 172  Q
    || |||||||||||| |||  ||||||||    
T  32935308 tgggaggtggtggaagctgcatgatcttt 32935280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 33968670 - 33968531
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtggtg 155  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| | ||| || ||||||  |||||||| |  | |||  |||||| ||| |||||    
T  33968670 gatcgcttttgattcgagatcgggagtcagttctttggttcaagttttgattttggatttttt--tgttcttttgacggaccgaaggttgagagatggtg 33968573  T
Q  156 gaaactgattgatctttagaatagtggctcaacttaggcgat 197  Q
    ||| ||||||||||||||||||||||||||||||| ||||||    
T  33968572 gaagctgattgatctttagaatagtggctcaactttggcgat 33968531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 13423482 - 13423606
Alignment:
Q  48 ggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt-tttggtgttctttcggtgtaccagaggttgt 146  Q
    |||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||||||| | |||| |||||||| || ||| ||||  |     
T  13423482 ggtggaccgatcacttttgattcgagatcgagagtcggttctttggctcaagtttggttatgggctttatatggt-ttctttcgatggaccggaggccgc 13423580  T
Q  147 gaggtggtggaaactgattgatcttt 172  Q
    |||||||||||| |||||||||||||    
T  13423581 gaggtggtggaagctgattgatcttt 13423606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 20701862 - 20701744
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtg 152  Q
    |||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |||| ||||||||||| | | ||||| | |||||     
T  20701862 ccgatcacttttgattcgagatcgggagttagttctttggcttaagtttggttttgggctttttatggt-ttctttcggtggatcggaggtcgagaggta 20701764  T
Q  153 gtggaaactgattgatcttt 172  Q
    |||||| |||| ||||||||    
T  20701763 gtggaagctgaatgatcttt 20701744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 21265003 - 21265111
Alignment:
Q  49 gtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtga 148  Q
    |||| ||||| ||||||||||||||||||||||| || | | ||| ||||||||||||||||||||| |||||||||||| | || ||| ||| |||||     
T  21265003 gtgggccgatagcttttgattcgagatcgggagttagttatctggttcaagtttggttttgggctttgttggtgttcttttgatggaccggagattgtgc 21265102  T
Q  149 ggtggtgga 157  Q
    |||||||||    
T  21265103 ggtggtgga 21265111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 3117508 - 3117576
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||||| |||||| |||||||||| |||||||||||||| |||||| |||||||| | |||||||||||    
T  3117508 tggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggcttt 3117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 192
Target Start/End: Original strand, 15944041 - 15944178
Alignment:
Q  54 ccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggtttt-gggcttttttggtgttctttcggtgtaccagaggttgtgaggtg 152  Q
    |||||| ||||||||| ||| || |||||||| || |||| ||||  ||| |||| ||||||||| ||| |||||| |||  |||||||||| |||||||    
T  15944041 ccgatcacttttgattagagttctggagtcagttccttggttcaatcttgttttttgggctttttaggttttcttttggttgaccagaggttttgaggtg 15944140  T
Q  153 gtggaaactgattgatctttagaatagtggctcaacttag 192  Q
    | ||||  || ||||||||  || ||||||||||||||||    
T  15944141 gaggaagttgtttgatctt--gagtagtggctcaacttag 15944178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 15120623 - 15120538
Alignment:
Q  87 tctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagaggttgtgaggtggtggaaactgattgatcttt 172  Q
    |||||||||||||||| |||||||||||||| |||| |||||| |||| | | ||||| | |||||||||||| ||| |||||||||    
T  15120623 tctttggctcaagtttagttttgggctttttatggt-ttcttttggtggatcggaggtcgagaggtggtggaagctggttgatcttt 15120538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 78
Target Start/End: Original strand, 20499934 - 20499965
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgg 78  Q
    ||||||||||||||||||||||||||||||||    
T  20499934 tggtggaccgatcgcttttgattcgagatcgg 20499965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Complemental strand, 7546498 - 7546464
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgg 78  Q
    |||||||||||||||| ||||||||||||||||||    
T  7546498 gtctggtggaccgatcacttttgattcgagatcgg 7546464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 34105428 - 34105466
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  34105428 tggtgggccgatcacttttgattcgagatcgggagtcag 34105466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 12794144 - 12794201
Alignment:
Q  61 cttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggctttttt 118  Q
    |||||||||||||||| |||||||| |||| ||  ||||||| ||||| |||||||||    
T  12794144 cttttgattcgagatcaggagtcagttcttgggtccaagtttagtttttggctttttt 12794201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 16180873 - 16180837
Alignment:
Q  142 gttgtgaggtggtggaaactgattgatctttagaata 178  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  16180873 gttgtgaggtggtggaagctgattgatctttaaaata 16180837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 1086 - 943
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaag-tttggttttgggcttttttggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| | |||||| ||||||| ||| || | | |||     
T  1086 gtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttggtttaagttttggttttgaggttttttagtgttctctcgatgaatcggaga 987  T
Q  143 ttgtgaggtggtggaaactgattgatctttagaatagtggctca 186  Q
    ||  || |||||||||  ||||||||||||||||||||||||||    
T  986 ttaagaagtggtggaagatgattgatctttagaatagtggctca 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 19395 - 19523
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtgtaccagagg 142  Q
    ||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||||    
T  19395 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggctttttatggt-ttctttcggtggatcggagg 19493  T
Q  143 ttgtgaggtggtggaaactgattgatcttt 172  Q
    | | ||| |||||||| |||| | ||||||    
T  19494 tcgagagttggtggaagctgaataatcttt 19523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 42207 - 42134
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt 117  Q
    ||||||||| |||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  42207 gtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttt 42134  T

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Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 58142 - 58228
Alignment:
Q  47 tggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttt-tggtgttctttcggtg 133  Q
    |||||| |||||| |||||||||| ||||||| |||||  | ||||| |||||||||||||| |||||||| |||| |||||||||||    
T  58142 tggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtttggttttaggctttttatggt-ttctttcggtg 58228  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 36731 - 36835
Alignment:
Q  56 gatcgcttttgattcgagatcgggagtcagctctttggctcaa--gtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggtgg 153  Q
    |||| ||||||||||||||||||||||||| |||||| |||||   ||||||||||| ||||||  |  ||||||||||| | | ||||| | || ||||    
T  36731 gatcacttttgattcgagatcgggagtcagttctttgtctcaactttttggttttggtctttttatgatttctttcggtggatcggaggtcgagatgtgg 36830  T
Q  154 tggaa 158  Q
    |||||    
T  36831 tggaa 36835  T

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Target: scaffold0068 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 35840 - 35770
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttt 115  Q
    |||| |||| |||||| ||||||||||||||||||||||||  |||||| || ||||| | |||||||||||    
T  35840 gtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttgacttaagttggtttttgggcttt 35770  T

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Target: scaffold0620 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 3842 - 3883
Alignment:
Q  44 gtctggtggaccgatcgcttttgattcgagatcgggagtcag 85  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  3842 gtctggtgggccgatcaattttgattcgagatcgggagtcag 3883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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