View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6935_high_1 (Length: 357)
Name: NF6935_high_1
Description: NF6935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6935_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 74 - 338
Target Start/End: Complemental strand, 29094428 - 29094167
Alignment:
| Q |
74 |
caggatagatgaaggtgggtgtactaattgaaacagatatcctccagctatatgaagaggtgttaggacaagccatcgatttataaaagccagttatcct |
173 |
Q |
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| T |
29094428 |
caggatagatgaaggtgggtgtactaattgaaacagat--cctccagctatatgaagaggtgttaggacaagccatcgatttataaaagccagttatcct |
29094331 |
T |
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| Q |
174 |
tttcaaaaagcagtacacaagctaatttgagggagcctatgaagaatatctttcaactattagaaagcatgggaactaggaaaaagttgggttttccatc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29094330 |
tttcaaaaagcagtacacaagctaatttgagggagcctatgaagaatatctttcaactattagaaagcatgggaactaggaaaaagtt-ggttttccatc |
29094232 |
T |
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| Q |
274 |
catggtcaacaagaagaaaaagtccaattttggtttttcgagggatagagtttggaggataatac |
338 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29094231 |
catgatcaacaagaagaaaaagtccaattttggtttttcgagggatagagtttggaggataatac |
29094167 |
T |
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