View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6935_low_1 (Length: 872)
Name: NF6935_low_1
Description: NF6935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6935_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 736; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 20 - 831
Target Start/End: Original strand, 17735711 - 17736522
Alignment:
| Q |
20 |
ctaaaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaagg |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| |
|
|
| T |
17735711 |
ctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagcctcatctttgcgaatgcactatacttcaaagg |
17735810 |
T |
|
| Q |
120 |
agtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17735811 |
agtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaat |
17735910 |
T |
|
| Q |
220 |
aatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17735911 |
aatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctg |
17736010 |
T |
|
| Q |
320 |
acgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagtt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736011 |
acgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagtt |
17736110 |
T |
|
| Q |
420 |
catgattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaa |
519 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736111 |
catgattccaagattcaatatttcttttgagattgaagcttctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaa |
17736210 |
T |
|
| Q |
520 |
atggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagcgacag |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736211 |
atggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagcgacag |
17736310 |
T |
|
| Q |
620 |
cccgtggcagtacaggcggcgctgctccatttcgtctnnnnnnnnnnnntccaatcgactttgttgctgaccacccttttttatttctgatcagagaaga |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736311 |
cccgtggcagtacaggcggcgctgctccatttcgtctccctccgccccctccaatcgactttgttgctgaccacccttttttatttctgatcagagaaga |
17736410 |
T |
|
| Q |
720 |
gtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaattccatagtatcttaaatatgttttctaagcaaccca |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
17736411 |
gtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaattccatagtatctcaaatatgttttctaaataaccca |
17736510 |
T |
|
| Q |
820 |
tttttatatttt |
831 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
17736511 |
ttttcatatttt |
17736522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 23 - 614
Target Start/End: Original strand, 17708060 - 17708651
Alignment:
| Q |
23 |
aaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagt |
122 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| | |||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
17708060 |
aaaaggagacaaaagggcttattaaaaatcttcttccacacaggtcagttgacagcttaaccagcctcatatttgctaatgcactatatttcaaaggagt |
17708159 |
T |
|
| Q |
123 |
ttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataat |
222 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17708160 |
ttggcaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaatgat |
17708259 |
T |
|
| Q |
223 |
cagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| || | |
|
|
| T |
17708260 |
cagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatg |
17708359 |
T |
|
| Q |
323 |
aaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagttcat |
422 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||||||| |||| ||||||||||||||| |
|
|
| T |
17708360 |
caaaagatgggttgtcagctttgattgatacggtagcttctaattctgagtttttggaacacaatcttcctcgtagaaaagtggaagtaggcaagttcag |
17708459 |
T |
|
| Q |
423 |
gattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaaatg |
522 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
17708460 |
gattccaagattcaatatttcttttaagattgaagcttctaagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatg |
17708559 |
T |
|
| Q |
523 |
gtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
17708560 |
gtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgcagc |
17708651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 23 - 615
Target Start/End: Original strand, 17698951 - 17699543
Alignment:
| Q |
23 |
aaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagt |
122 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| || |||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
17698951 |
aaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctcatctttgctaatgcactatatttcaaaggagt |
17699050 |
T |
|
| Q |
123 |
ttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataat |
222 |
Q |
| |
|
||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
17699051 |
gtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccatttatgaccagcaagaatgat |
17699150 |
T |
|
| Q |
223 |
cagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacg |
322 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
17699151 |
cagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgaca |
17699250 |
T |
|
| Q |
323 |
aaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagttcat |
422 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
17699251 |
aaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctcgtagaaaagtggaagtaggcaagttcag |
17699350 |
T |
|
| Q |
423 |
gattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaaatg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
17699351 |
gattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaaaaatg |
17699450 |
T |
|
| Q |
523 |
gtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagcg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
17699451 |
gtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgcagcg |
17699543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 23 - 614
Target Start/End: Original strand, 16721937 - 16722528
Alignment:
| Q |
23 |
aaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagt |
122 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||| || |||||| ||||||||||| | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16721937 |
aaaaggagacaaaagggcttattaaaaatcttcttccacctggctcagttaacagcttaacccgcctcatctttgctaatgcactatatttcaaaggagt |
16722036 |
T |
|
| Q |
123 |
ttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataat |
222 |
Q |
| |
|
||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
16722037 |
gtggaaacaacagttcgatactacaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccatttatgaccagcaagaatgat |
16722136 |
T |
|
| Q |
223 |
cagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacg |
322 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
16722137 |
cagtttatcagttcgttagatggttttaaagtccttggtcttccttataaacaaggcaaagatgaacgtgcattctctatttacttttttcttcctgaca |
16722236 |
T |
|
| Q |
323 |
aaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagttcat |
422 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
16722237 |
aaaaagatgggttgtcaaatttgattgataaagtagcttctgattctgagtttttggaacggaatcttcctcgtagaaaagtggaagtaggcaagttcag |
16722336 |
T |
|
| Q |
423 |
gattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaaatg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
16722337 |
gattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattggctttaccttttactctgggaggtttgacaaaaatg |
16722436 |
T |
|
| Q |
523 |
gtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagc |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
16722437 |
gtggactctcctataagtcaagaactttatgtttccggcatatttcagaagtctttcattgaagtaaatgaagaaggtacgaaagctgcagc |
16722528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 615
Target Start/End: Original strand, 17717884 - 17718476
Alignment:
| Q |
23 |
aaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagt |
122 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||| || || |||||| |||||||||| ||||| || ||||| |||||| |||| ||||||||||| |
|
|
| T |
17717884 |
aaaaggagacaaaagggcttattaaaaatcttcttcaacctggctcagttcacagcttaacgagtctaatatttgcaaatgcactatatttcaaaggagt |
17717983 |
T |
|
| Q |
123 |
ttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataat |
222 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17717984 |
gtggaaacaaccctttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaatgat |
17718083 |
T |
|
| Q |
223 |
cagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacg |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| || | |
|
|
| T |
17718084 |
cagtttatcagttcttttgatggttttaaagttcttggtcttccttacaaacaaggcaattatgggcgtgcattctccatttacttttttcttcccgatg |
17718183 |
T |
|
| Q |
323 |
aaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagttcat |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||||| ||||||||||||||| || |||||||||| |||| ||||||||||||||| |
|
|
| T |
17718184 |
caaaagatgggttgtccgctttgattgataatgtaacttctgattatgagtttttggaacacaatcttcctcgtagaaaagtggaagtaggcaagttcag |
17718283 |
T |
|
| Q |
423 |
gattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattgactttacctttttcgaagggaggtttgacaaaaatg |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
17718284 |
gattccaagattcaatatttcttttgagattgaagctcctgagttactaaagaaattaggattgactttacctttttctatgggaggtttgacaaaaatg |
17718383 |
T |
|
| Q |
523 |
gtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaaggtacgatagctgcagcg |
615 |
Q |
| |
|
|||||||||||||||||||||||| | | |||| || |||| |||||||||||| ||||||| |||| ||||||||||| | |||||||||| |
|
|
| T |
17718384 |
gtggactctcctataagtcaagaaatatttgtttccgacatacttcagaagtcttgcattgaagtaaacgaagaaggtacaaaagctgcagcg |
17718476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 486
Target Start/End: Original strand, 17744895 - 17745357
Alignment:
| Q |
23 |
aaaaggagacaaaggggtttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagt |
122 |
Q |
| |
|
||||| ||||||| ||| ||||| | ||||||||||||| ||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
17744895 |
aaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaaccagcctaatctttgctaatgcactatacttcaaaggagt |
17744994 |
T |
|
| Q |
123 |
ttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataat |
222 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17744995 |
atggaaacaaaagtttgatacttcaaaaacgaaggactatgattttgaccttcttaacggcaagtcagtaaaggttccctttatgaccagcaagaatgat |
17745094 |
T |
|
| Q |
223 |
cagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacg |
322 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17745095 |
cagtttatcagttcgttagatggttttaaagtccttggtcttcct-ataaacaaggcaaagatgggcgtgcattctctatttacttttttcttcctgacg |
17745193 |
T |
|
| Q |
323 |
aaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtaatcaagtcaaagtaggcaagttcat |
422 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
17745194 |
aaaaagatggtttgtcagctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgtgaagaagtccaagtaggcaagttcag |
17745293 |
T |
|
| Q |
423 |
gattccaagattcaatatttcttttgagattgaagcatctgagttattaaataaattaggattg |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
17745294 |
gattccaagattcaatatttcttttgagattgaagcttctgagttactaaagaaattaggattg |
17745357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 669 - 858
Target Start/End: Original strand, 17736943 - 17737132
Alignment:
| Q |
669 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
768 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17736943 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17737042 |
T |
|
| Q |
769 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaatgatgtcc |
858 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17737043 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaatatataaatggggtaaattatgtcc |
17737132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 669 - 835
Target Start/End: Original strand, 17708706 - 17708872
Alignment:
| Q |
669 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
768 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17708706 |
tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17708805 |
T |
|
| Q |
769 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata |
835 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17708806 |
ggttgattgttgaattccatagtatcttaaatatgttttctaagcaacccatttttatattttaata |
17708872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 685 - 835
Target Start/End: Original strand, 16730588 - 16730738
Alignment:
| Q |
685 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgatttttgaatt |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16730588 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgattgttgaatt |
16730687 |
T |
|
| Q |
785 |
ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata |
835 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16730688 |
ccatagtatcttaaatatgttttctaagcaacccatttttatattttaata |
16730738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 669 - 821
Target Start/End: Original strand, 17718530 - 17718682
Alignment:
| Q |
669 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
768 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17718530 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17718629 |
T |
|
| Q |
769 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatt |
821 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17718630 |
ggttgattcttgaattccatagcatcttaaatatgttttctaagcaacccatt |
17718682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 669 - 831
Target Start/End: Original strand, 17699597 - 17699759
Alignment:
| Q |
669 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
768 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17699597 |
tccaatcgactttgtagctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
17699696 |
T |
|
| Q |
769 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt |
831 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||| || ||||||||||||||| |
|
|
| T |
17699697 |
ggttaattgttgaattccatagtatctcaaatatgttttctaaataatccatttttatatttt |
17699759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 669 - 831
Target Start/End: Original strand, 16722583 - 16722745
Alignment:
| Q |
669 |
tccaatcgactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
768 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16722583 |
tccaatggactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgat |
16722682 |
T |
|
| Q |
769 |
ggttgatttttgaattccatagtatcttaaatatgttttctaagcaacccatttttatatttt |
831 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||| || ||||||| ||||||| |
|
|
| T |
16722683 |
ggttaattgttgaattccatagtatctcaaatatgttttctaaataaaccattttaatatttt |
16722745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 786 - 835
Target Start/End: Original strand, 17714184 - 17714233
Alignment:
| Q |
786 |
catagtatcttaaatatgttttctaagcaacccatttttatattttaata |
835 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
17714184 |
catagtatctcaaatatgtcttataagcaacccatttttatgttttaata |
17714233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 64 - 398
Target Start/End: Original strand, 46531747 - 46532081
Alignment:
| Q |
64 |
gggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatg |
163 |
Q |
| |
|
|||||| |||| |||||||| | ||||| |||||||||||| | ||||| || |||| ||| | | ||| |||||| |||||||||| || ||| ||| |
|
|
| T |
46531747 |
gggtcaattgatagcttaactggactcatttttgctaatgcactctactttaatggagcatggcatcaaccatttgatgcttcaaaaacaaaagaccatg |
46531846 |
T |
|
| Q |
164 |
attttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtct |
263 |
Q |
| |
|
||||| |||||||| ||||| ||| | ||||||||||| ||||| |||||||| || |||||||| | | |||||||||||||||| ||||| |||| |
|
|
| T |
46531847 |
attttcaccttctcggtggcagctcaattaaggttcccttcatgactagcaagaagaagcagtttataaatgcttttgatggttttaagatccttcgtct |
46531946 |
T |
|
| Q |
264 |
tccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttct |
363 |
Q |
| |
|
|||||| || |||||||| |||| ||| ||||||||| |||||||||||||| || | | ||||||| |||| |||||||||||| ||||| ||||| |
|
|
| T |
46531947 |
tccttataagcaaggcaacgatattcgtcaattctctatgtacttttttcttcccgatgcacaagatggattgttagctttgattgagaaagtggcttcc |
46532046 |
T |
|
| Q |
364 |
gattctgagtttttggaacagaaacttcctcgtaa |
398 |
Q |
| |
|
| ||||| ||||| |||| |||||||| ||||| |
|
|
| T |
46532047 |
aaacctgagattttgaaacacaaacttccacgtaa |
46532081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 148 - 317
Target Start/End: Original strand, 46483960 - 46484129
Alignment:
| Q |
148 |
aaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggtt |
247 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||| || |||||||| || |||||||||||| |
|
|
| T |
46483960 |
aaaacaaaagactatgattttcaccttctcaatggcagctcagtcaaggttccctttatgactagcaagaagaagcagtttattagagcttttgatggtt |
46484059 |
T |
|
| Q |
248 |
ttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
||||||| |||||||||||||| || |||||| | ||||||||| ||| |||| |||||||||||||| |
|
|
| T |
46484060 |
ttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttcc |
46484129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 137 - 317
Target Start/End: Original strand, 46473830 - 46474010
Alignment:
| Q |
137 |
ttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttc |
236 |
Q |
| |
|
||||| |||||| ||| || |||||||||||| ||||||||||||||| ||||| |||||| |||||||||| |||||||| || |||||||| || | |
|
|
| T |
46473830 |
ttgatgcttcaacaacaaaagactatgatttttaccttctcaatggcagctcagttaaggtttcctttatgactagcaagaagaagcagtttattagagc |
46473929 |
T |
|
| Q |
237 |
ttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||| | ||||||||| ||| |||| |||||||||||||| |
|
|
| T |
46473930 |
ttttgatggttttaaagttcttggtcttccttataagcaaggcgaagataagcgtcgtttcactatgtacttttttcttcc |
46474010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 88 - 372
Target Start/End: Original strand, 46479642 - 46479926
Alignment:
| Q |
88 |
ctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt |
187 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||||| ||||||| ||||||||||| | ||||| || ||| ||||| | ||||| | |
|
|
| T |
46479642 |
ctcatctttgccaatgcactatacttcaaaggagcgtggaatgataagtttgatgcttcaaaaacggaagactacgagtttcaccttttgaatggtagcc |
46479741 |
T |
|
| Q |
188 |
cagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataa |
287 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || |||||||| || ||||||||||||||||||| || ||||||||||| || |||||| | ||||| |
|
|
| T |
46479742 |
cagtcaaggttcccttcatgaccagcaagaagaagcagtttattagagcttttgatggttttaaagttctcggtcttccttataagcaaggcgaagataa |
46479841 |
T |
|
| Q |
288 |
gcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgag |
372 |
Q |
| |
|
|||| |||| | || |||||||||||||| | | ||||||||||||| |||||||| | || || || |||||||| |||||| |
|
|
| T |
46479842 |
gcgtcaattcaccatgtacttttttcttccaaatgcaaaagatgggttggcagctttggtcgaaaaggtggcttctgaatctgag |
46479926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 76 - 350
Target Start/End: Original strand, 46490549 - 46490823
Alignment:
| Q |
76 |
agcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttc |
175 |
Q |
| |
|
||||||||||| || ||| ||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||| ||||| |
|
|
| T |
46490549 |
agcttaaccaggctaatcattgctaatgcactatacttcaaaggagtgtggaatgataagtttgatgcttcaaaaacgaaagactatgattttcaccttt |
46490648 |
T |
|
| Q |
176 |
tcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaaca |
275 |
Q |
| |
|
| ||||||| ||| | ||||||||||| ||||| |||||| | | || | ||| || |||| |||| ||||||||| ||||| |||||||| || || |
|
|
| T |
46490649 |
tgaatggcagctcaattaaggttcccttcatgactagcaaggaagaacaatatattagagctttcgatgattttaaagttcttggccttccttataagca |
46490748 |
T |
|
| Q |
276 |
aggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattga |
350 |
Q |
| |
|
|||| | |||||||||| ||| |||| |||||||||||||| | | |||||||||| || || ||||| |||| |
|
|
| T |
46490749 |
aggcgaagataagcgtgaatttactatgtacttttttcttccaaatgcaaaagatgggctgccaactttgcttga |
46490823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 41 - 362
Target Start/End: Complemental strand, 46554507 - 46554183
Alignment:
| Q |
41 |
ttattaatgatcttcttccacgcgggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttga |
140 |
Q |
| |
|
|||||| |||| ||||| | |||||||| |||| || |||||||| ||||| |||||||||||| |||| || ||||| | ||| | | ||||||||| |
|
|
| T |
46554507 |
ttattactgatgttctttcgtgcgggtcaattgatagtttaaccagactcatttttgctaatgcactatattttaaaggtgcatggcatcaaccgtttga |
46554408 |
T |
|
| Q |
141 |
tacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttctttt |
240 |
Q |
| |
|
||||| |||| || |||||||||||| ||||||| |||| | ||| | ||||||||||| | |||||||| | | | ||||||||||||| |||| |
|
|
| T |
46554407 |
cgcttcagaaacaaaagactatgattttcaccttcttgatggtagctcattcaaggttcccttcaagaccagcagggagagtcagtttatcagtgttttt |
46554308 |
T |
|
| Q |
241 |
gatggttttaaagtccttggtcttccttacaaacaaggcaat---gataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgt |
337 |
Q |
| |
|
||||||||||| |||||| |||||||||| | || || | | ||| | ||| |||||||| |||||||| ||||| || | |||||||||||||| |
|
|
| T |
46554307 |
gatggttttaaggtccttcgtcttccttatgagcatggtactatagatgaccgtcatttctctatgtactttttacttcccgatgcaaaagatgggttgt |
46554208 |
T |
|
| Q |
338 |
cagctttgattgataaagtagcttc |
362 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
46554207 |
cagctttgattgagaaagtggcttc |
46554183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 64 - 345
Target Start/End: Complemental strand, 45884032 - 45883751
Alignment:
| Q |
64 |
gggtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatg |
163 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| |||||||||||||| ||||| || |||| ||||| | |||||||||| |||| ||||| || |||| | |
|
|
| T |
45884032 |
gggtcagttaacaacttaaccagactcatatttgctaatgcattgtactttaagggagcatggaatcaaccgtttgatccttcgaaaacaaaatactacg |
45883933 |
T |
|
| Q |
164 |
attttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtct |
263 |
Q |
| |
|
||||| | ||| ||||| | ||||| || |||||||| |||||||||||||| |||| ||||| || ||||||||||||||||||| ||| || | |
|
|
| T |
45883932 |
attttcatattcataatggtagttcagtcaaagttcccttcatgaccagcaagaaagatcaatttattagagcttttgatggttttaaagtgctttgtat |
45883833 |
T |
|
| Q |
264 |
tccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttg |
345 |
Q |
| |
|
||||| | ||||| ||||||||| ||||||||| |||||||||||||| | | ||||||||| ||||||||||| |
|
|
| T |
45883832 |
cccttatgagcaaggtggagataagcgtcgattctctatgtacttttttcttccaaatgcaaaagatggactgtcagctttg |
45883751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 70 - 375
Target Start/End: Original strand, 46544291 - 46544611
Alignment:
| Q |
70 |
gttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttg |
169 |
Q |
| |
|
||||| |||||||||| ||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
46544291 |
gttgatagcttaaccaacctcatctttgcaaacgcactatacttcaaaggagcatggtcggaggagtttgatacttcaaaaacaaaagactatgatttta |
46544390 |
T |
|
| Q |
170 |
accttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttcctta |
269 |
Q |
| |
|
||||||||||||||| ||| |||||||| || ||||| |||| ||| | || ||||||||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
46544391 |
accttctcaatggcagccaagtcaaggttcctttcatgacaagcatgaagagacaatttatcagtgtttttgatggttttaaagtccttcgtctttttta |
46544490 |
T |
|
| Q |
270 |
caaaca-------------aggcaa--tgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaa |
354 |
Q |
| |
|
|| || | |||| |||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||| ||| || |
|
|
| T |
46544491 |
taagcatgagtattcgtataagcaaagtgataagcgttatttctctatttacttttttcttcctgatgcaaaagatgggttgttagctttgactgaaaag |
46544590 |
T |
|
| Q |
355 |
gtagcttctgattctgagttt |
375 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
46544591 |
gtagcttctgaatctgagttt |
46544611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 160 - 317
Target Start/End: Complemental strand, 46549188 - 46549031
Alignment:
| Q |
160 |
tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg |
259 |
Q |
| |
|
||||||||| ||||||||||||||| || || ||||||||||| || ||||||| |||| |||||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
46549188 |
tatgattttcaccttctcaatggcagctcggtcaaggttcccttcataaccagcaggaatgatcagtttatcagtgtttttgatggtttcaaagttcttt |
46549089 |
T |
|
| Q |
260 |
gtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
||||||||| ||| |||| || ||||| || ||||||||| |||||||||||||| |
|
|
| T |
46549088 |
atcttccttataaataaggaaaagataaacgacaattctctatgtacttttttcttcc |
46549031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 89 - 382
Target Start/End: Original strand, 46538838 - 46539143
Alignment:
| Q |
89 |
tcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagtc |
188 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||| || | |||||||||||||||| || |||||||||||| ||||||| ||||||| || |
|
|
| T |
46538838 |
tcatctttgcaaatgcactatacttcaaaggagtatggttacaggaggttgatacttcaaaaacaaaagactatgattttaaccttcttaatggcagctc |
46538937 |
T |
|
| Q |
189 |
agtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaaca----------agg |
278 |
Q |
| |
|
||| ||||||||||| ||||| ||| | | || |||| ||| ||||||||||||||||||||| ||||| ||| || || ||| |
|
|
| T |
46538938 |
agtcaaggttcccttcatgacaagccgggagtgacaacttattagtgtttttgatggttttaaagtcctccgtcttttttataagcatgatgcttttagg |
46539037 |
T |
|
| Q |
279 |
caa--tgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagtttt |
376 |
Q |
| |
|
||| |||||||||| |||||||| ||||||||||||||||| | |||||||||||||| |||||||| || || ||||||||||| ||||| ||| |
|
|
| T |
46539038 |
caaagtgataagcgttatttctctatgtacttttttcttcctgatgcaaaagatgggttgttagctttgaccgaaaaggtagcttctgaatctgaatttc |
46539137 |
T |
|
| Q |
377 |
tggaac |
382 |
Q |
| |
|
|||||| |
|
|
| T |
46539138 |
tggaac |
46539143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 67 - 317
Target Start/End: Original strand, 5156076 - 5156326
Alignment:
| Q |
67 |
tcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgatt |
166 |
Q |
| |
|
|||||||| ||||||||| | |||||||||||||||||| | ||||| ||||||| |||| ||||||| || |||||||| |||||||||| |
|
|
| T |
5156076 |
tcagttgatagcttaacccgcctcatctttgctaatgcactctactttaaaggagcatggagtgagaagtttgatgttttgaaaacgaaagactatgatt |
5156175 |
T |
|
| Q |
167 |
ttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttcc |
266 |
Q |
| |
|
|| ||||| | ||||||| || || ||||||||||| ||||||||| || | ||||||||||| ||| || ||| |||||||| ||| ||||||| |
|
|
| T |
5156176 |
ttcaccttttgaatggcagctcggtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatggtggctttaaagttcttcgtcttcc |
5156275 |
T |
|
| Q |
267 |
ttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
|| ||| ||||||| ||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
5156276 |
gtataaaaaaggcaaagataagcgtcgattctctatgtacatttttcttcc |
5156326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 67 - 374
Target Start/End: Original strand, 5160106 - 5160412
Alignment:
| Q |
67 |
tcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgatt |
166 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||||||| | ||||| ||||||| |||| ||||||| ||| |||||||| |||||||||| |
|
|
| T |
5160106 |
tcagttgataggttaaccagactcatctttgctaatgcactctactttaaaggagcatggagtgataagtttgatgtttcgaaaacgaaagactatgatt |
5160205 |
T |
|
| Q |
167 |
ttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttcc |
266 |
Q |
| |
|
|| ||||| | ||||| | ||||| ||||||||||| ||||||||| || | ||||||||||| ||| ||| | |||||||| ||| ||||||| |
|
|
| T |
5160206 |
ttcaccttttgaatgg-agctcagtcaaggttcccttcatgaccagcgaggagaatcagtttattgaagcttatgacgactttaaagttcttcgtcttcc |
5160304 |
T |
|
| Q |
267 |
ttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgat |
366 |
Q |
| |
|
|| || ||||||| ||||||||| |||||||||| ||| |||| ||||| | | ||||||||| ||||| ||||| || | || || |||||||| |
|
|
| T |
5160305 |
gtataagaaaggcaaagataagcgtccattctctatgtacattttccttccaaatgcaaaagatggcttgtcgactttggttaagaaggtggcttctgaa |
5160404 |
T |
|
| Q |
367 |
tctgagtt |
374 |
Q |
| |
|
|||||||| |
|
|
| T |
5160405 |
tctgagtt |
5160412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 158 - 317
Target Start/End: Complemental strand, 46526627 - 46526469
Alignment:
| Q |
158 |
actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct |
257 |
Q |
| |
|
||||||||||| ||||| | ||||||| ||||| ||||||||||| ||||||||| |||||| || ||||||||| ||| |||||||| ||||| || |
|
|
| T |
46526627 |
actatgattttcacctt-taaatggcagctcagtcaaggttcccttcatgaccagcgagaatagacaatttatcagtgttttcgatggtttcaaagtact |
46526529 |
T |
|
| Q |
258 |
tggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
|||||||||| || ||||| | ||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
46526528 |
ccgtcttccttataagcaaggagaagataagcgtcaattctctatgtacatttttcttcc |
46526469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 777
Target Start/End: Original strand, 46480224 - 46480325
Alignment:
| Q |
676 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat |
775 |
Q |
| |
|
|||||||| |||||||||||||| |||||| |||| |||||||| || | ||||| || ||||||||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
46480224 |
gactttgtagctgaccaccctttcttatttatgattagagaagacttgaccggaacaatcatctttgttggacaggtgctcaatcctcttgctgggtgat |
46480323 |
T |
|
| Q |
776 |
tt |
777 |
Q |
| |
|
|| |
|
|
| T |
46480324 |
tt |
46480325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 685 - 769
Target Start/End: Original strand, 5160717 - 5160801
Alignment:
| Q |
685 |
gctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg |
769 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| | | ||||||||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
5160717 |
gctgaccaccctttcttatttctgattagagaagattggactggaaccattctctttgttggacaagtactcaatcctcttgatg |
5160801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 344
Target Start/End: Original strand, 51943814 - 51943998
Alignment:
| Q |
160 |
tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg |
259 |
Q |
| |
|
||||||||| ||||||| ||||| | ||||| ||||||||||| ||||||||||| || || |||||||| || ||||| ||||||||| ||| |
|
|
| T |
51943814 |
tatgattttcaccttctaaatggtagctcagtcaaggttcccttcatgaccagcaataagaagcagtttattgaagtttatgatgattttaaagttcttc |
51943913 |
T |
|
| Q |
260 |
gtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagcttt |
344 |
Q |
| |
|
||||||||| || |||| | |||||||| ||||||||| || ||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
51943914 |
atcttccttataagaaaggtgaagataagcgccaattctctatgtatttttttcttccaaatgcaaaagatgggttgtcagcttt |
51943998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 778
Target Start/End: Original strand, 46491137 - 46491239
Alignment:
| Q |
676 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatggttgat |
775 |
Q |
| |
|
|||||||| |||| ||||||||| || ||| |||| |||||||| || | |||||| || ||||||||||| ||||| |||||||||||| ||| |||| |
|
|
| T |
46491137 |
gactttgtggctggccaccctttcttgtttatgattagagaagaattgactggaacaatcatctttgttggacaggtgttcaatcctcttgctgggtgat |
46491236 |
T |
|
| Q |
776 |
ttt |
778 |
Q |
| |
|
||| |
|
|
| T |
46491237 |
ttt |
46491239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 599
Target Start/End: Original strand, 46498217 - 46498311
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaagg |
599 |
Q |
| |
|
||||||||||| ||||||||| ||||| || | |||||| | |||| |||| ||| ||||| || ||||||||||||||| ||||||||||||| |
|
|
| T |
46498217 |
ggaggtttgactaaaatggtgaactctgctgtgagtcaaaacctttatgtttccaaaatattccacaagtctttcattgaagtaaatgaagaagg |
46498311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 599
Target Start/End: Original strand, 46539250 - 46539360
Alignment:
| Q |
489 |
tttacctttttcgaagggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaatta |
588 |
Q |
| |
|
||||||||| || | ||||||||||||||||||||||||||||||| ||||||| | |||| |||| || |||| || |||||||| |||||| || |
|
|
| T |
46539250 |
tttacctttctctcaaggaggtttgacaaaaatggtggactctcctacaagtcaaaacctttatgtttccgatgtattccacaagtcttttattgaagta |
46539349 |
T |
|
| Q |
589 |
aatgaagaagg |
599 |
Q |
| |
|
|||||| |||| |
|
|
| T |
46539350 |
aatgaacaagg |
46539360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 676 - 758
Target Start/End: Original strand, 51944321 - 51944403
Alignment:
| Q |
676 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaa |
758 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||||||| || | |||||| || ||||||||||| ||||| |||| |
|
|
| T |
51944321 |
gactttgtagctgaccaccctttcttatttctgattagagaagatttgactggaacaatcatctttgttggacaggtgctcaa |
51944403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 374
Target Start/End: Original strand, 45902876 - 45903092
Alignment:
| Q |
158 |
actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct |
257 |
Q |
| |
|
||||| ||||| ||||||| ||||| | ||||| ||||||||||| ||||||||| |||| | ||||||||| | ||| |||||||| ||||| || |
|
|
| T |
45902876 |
actataatttttaccttctaaatggtagctcagtcaaggttcccttcatgaccagcgagaagaggcagtttatccgcgttttcgatggtttcaaagtact |
45902975 |
T |
|
| Q |
258 |
tggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagta |
357 |
Q |
| |
|
| |||||||||| | ||||| | ||||||||| ||||||||| || |||||||||| | | ||||||||| ||| | ||| |||| || ||| |
|
|
| T |
45902976 |
tcgtcttccttatgagcaaggagaagataagcgtcaattctctatgtatatttttcttccaaaagcaaaagatggtttgcaaagtttagttgagaaggta |
45903075 |
T |
|
| Q |
358 |
gcttctgattctgagtt |
374 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
45903076 |
gcttctgaatctgagtt |
45903092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 350
Target Start/End: Original strand, 16025333 - 16025595
Alignment:
| Q |
88 |
ctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgaccttctcaatggcaagt |
187 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||| || ||| | | || ||||||| |||| |||| || |||||||||||| || |||| |||||||| |
|
|
| T |
16025333 |
ctcatatttgctaatgcactttactttaaaggggtgtgggatcaacagtttgatgcttcggaaacaaaagactatgattttcacattctgaatggcaacg |
16025432 |
T |
|
| Q |
188 |
cagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataa |
287 |
Q |
| |
|
| | || |||||||| ||||||||||| | |||| ||||| || |||| |||| ||| ||||| ||| ||||||| |||| |||||| | ||||| |
|
|
| T |
16025433 |
taatcaaagttcccttcatgaccagcaacgaggatcaatttatttgtgctttcgatgatttcaaagtacttcgtcttccatacagacaaggtgaagataa |
16025532 |
T |
|
| Q |
288 |
gcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattga |
350 |
Q |
| |
|
|||| ||| | || || ||||||||||| | |||| |||||| |||| ||||||||||| |
|
|
| T |
16025533 |
gcgtcaattttgaatgtatttttttcttccaaatgaaagagatggactgtctgctttgattga |
16025595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 46236921 - 46236819
Alignment:
| Q |
237 |
ttttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttg |
336 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||| || |||||||| ||| || || ||||||||| || |||||||||| || | ||||||||||||| |
|
|
| T |
46236921 |
ttttgatggttataaagttctttatcttccttataatcaaggcaaagatgagtgtcaattctctatgtatatttttcttccagatgcaaaagatgggttg |
46236822 |
T |
|
| Q |
337 |
tca |
339 |
Q |
| |
|
||| |
|
|
| T |
46236821 |
tca |
46236819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 505 - 599
Target Start/End: Original strand, 46480059 - 46480153
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaagg |
599 |
Q |
| |
|
|||||| ||||||| |||||| ||||| | | |||||| | |||| |||| ||| |||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
46480059 |
ggaggtctgacaaagatggtgaactcttcagttagtcaaaacctttgtgtttccaatatatttcacaagtctttcattgaagtaaatgaagaagg |
46480153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 769
Target Start/End: Original strand, 5156676 - 5156769
Alignment:
| Q |
676 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttgatg |
769 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||| || |||||| | | | ||||||||| |||||||||||| | ||| ||||||| ||||||| |
|
|
| T |
5156676 |
gactttgtagctgatcaccctttcttatttctaattagagaaaactcgactggaaccattctctttgttggacaagtgctcaatccacttgatg |
5156769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 46549262 - 46549227
Alignment:
| Q |
86 |
gtctcatctttgctaatgcattatacttcaaaggag |
121 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46549262 |
gtctcatctttgcaaatgcattatacttcaaaggag |
46549227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 534
Target Start/End: Original strand, 5156514 - 5156543
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcct |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5156514 |
ggaggtttgacaaaaatggtggactctcct |
5156543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 766
Target Start/End: Original strand, 46498380 - 46498469
Alignment:
| Q |
677 |
actttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctcttg |
766 |
Q |
| |
|
||||||| ||||||||||| || |||||| | ||||||||||| || | ||||| || |||||||||| ||||| |||||||||||| |
|
|
| T |
46498380 |
actttgtagctgaccacccattcttatttattatcagagaagatttgaccggaactatcgtctttgttgggcaggtgctcaatcctcttg |
46498469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 765
Target Start/End: Original strand, 46544915 - 46545004
Alignment:
| Q |
676 |
gactttgttgctgaccacccttttttatttctgatcagagaagagtttagtggaaccatactctttgttggaaaggtggtcaatcctctt |
765 |
Q |
| |
|
|||||||| |||||||||||||| || ||| ||||||||||||| || |||||| |||||||| ||||| | || ||||||||||| |
|
|
| T |
46544915 |
gactttgtagctgaccaccctttcttgtttttgatcagagaagatttgtctggaacggtactctttattggacaagttctcaatcctctt |
46545004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 74 - 374
Target Start/End: Original strand, 15555850 - 15556150
Alignment:
| Q |
74 |
acagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgattttgacct |
173 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| | ||||| |||||| | ||| | | ||||||| |||| |||||||| |||||||||||| |||| |
|
|
| T |
15555850 |
acagcttaaccagactcatctttgcaaatgcactgtactttaaaggactatggtatcagaagtttgatgcttccaaaacgaaagactatgattttcacct |
15555949 |
T |
|
| Q |
174 |
tctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttccttacaaa |
273 |
Q |
| |
|
||||||||| | ||| | |||||||| ||||||| |||||| | |||| | ||| || ||||||||||||| ||||| ||| |||||| ||| ||| |
|
|
| T |
15555950 |
tctcaatggtagctcactcaaggttccgtttatgagcagcaaagaggatcaatatattggtgcttttgatggtttcaaagtactttgtcttcattataaa |
15556049 |
T |
|
| Q |
274 |
caaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagcttctgattctgagt |
373 |
Q |
| |
|
|||||| | || | || ||||||||| |||||| ||||||| || | ||||||||| | || |||||| |||| || || ||||| || ||||||| |
|
|
| T |
15556050 |
caaggccaatatgatcgccgattctctatctactttattcttccagatgcaaaagatggactctcggctttggttgaaaaggtggcttcagaatctgagt |
15556149 |
T |
|
| Q |
374 |
t |
374 |
Q |
| |
|
| |
|
|
| T |
15556150 |
t |
15556150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 160 - 374
Target Start/End: Original strand, 35155342 - 35155556
Alignment:
| Q |
160 |
tatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttg |
259 |
Q |
| |
|
||||||||| ||||||| ||||||| ||||| ||||||||||| |||||||||| | |||| ||||| || ||||||||||||||||||| ||| |
|
|
| T |
35155342 |
tatgattttcaccttctgaatggcagctcagtcaaggttcccttcatgaccagcagccttgatcaatttattagagcttttgatggttttaaagttcttc |
35155441 |
T |
|
| Q |
260 |
gtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagtagc |
359 |
Q |
| |
|
||||||| || || ||||| || ||| |||| ||||||||| ||| |||||||||| | | ||||||||| | ||||||||| |||| || || || |
|
|
| T |
35155442 |
gtcttccgtataagcaaggaaaagatgagcggaaattctctatgtacatttttcttccaaatgcaaaagatggactatcagctttggttgagaaggtggc |
35155541 |
T |
|
| Q |
360 |
ttctgattctgagtt |
374 |
Q |
| |
|
|||||| | |||||| |
|
|
| T |
35155542 |
ttctgaatttgagtt |
35155556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 158 - 372
Target Start/End: Original strand, 35162361 - 35162574
Alignment:
| Q |
158 |
actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct |
257 |
Q |
| |
|
||||||||||| ||||||| ||||| | ||||| ||||||||||| ||||| | ||| | |||||||||| || ||||||||||||||||||| || |
|
|
| T |
35162361 |
actatgattttcaccttctgaatggaagctcagtcaaggttcccttcatgactaccaaccttgatcagtttattagagcttttgatggttttaaagttct |
35162460 |
T |
|
| Q |
258 |
tggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtcagctttgattgataaagta |
357 |
Q |
| |
|
| |||||||||| || ||||| || ||| |||| ||||||||| ||| ||||||||| | | ||||||||| ||||||||||| |||| || || |
|
|
| T |
35162461 |
tcgtcttccttataagcaaggaaaagatgagcggaaattctctatgtac-attttcttccaaatgcaaaagatggcctgtcagctttggttgagaaggtg |
35162559 |
T |
|
| Q |
358 |
gcttctgattctgag |
372 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
35162560 |
gcttctgattttgag |
35162574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 593
Target Start/End: Original strand, 35162707 - 35162795
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatga |
593 |
Q |
| |
|
|||||||||||||||||||||||||| | | | ||||| | |||| ||| ||| ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
35162707 |
ggaggtttgacaaaaatggtggactcacttgaaggtcaaaaccttttagtttccaacatatttcacaagtctttcattgaagtaaatga |
35162795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 599
Target Start/End: Original strand, 35155690 - 35155781
Alignment:
| Q |
508 |
ggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaagg |
599 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| | || || |||| || |||||||||||||| ||| |||||| |||| ||| |||| |
|
|
| T |
35155690 |
ggtttgacaaaaatggtggactctcttgaaggtcaaaatctctccgttagcaacatatttcagaagtgttttattgaagtaaacgaaaaagg |
35155781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 239 - 396
Target Start/End: Complemental strand, 21464312 - 21464155
Alignment:
| Q |
239 |
ttgatggttttaaagtccttggtcttccttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcctgacgaaaaagatgggttgtc |
338 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||||| | || || | | |||||| |||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
21464312 |
ttgatggttttaaagtccttcgtcttccttatacgcaaggtgaagacaaacatcgattctcaatttacttttttcttcctgatgcaaaagatggattgtt |
21464213 |
T |
|
| Q |
339 |
agctttgattgataaagtagcttctgattctgagtttttggaacagaaacttcctcgt |
396 |
Q |
| |
|
|||||||||| | || || ||||| || ||| ||||||||||||| || ||||||||| |
|
|
| T |
21464212 |
agctttgattaagaaggttgcttccgaatctaagtttttggaacaaaagcttcctcgt |
21464155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 505 - 599
Target Start/End: Complemental strand, 9692574 - 9692480
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaagg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||| ||||||||| ||| ||||||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
9692574 |
ggaggtttgacaaaaatggtggactctcttgaaggtcaagacctttctgtttccaacatatttcacaagtctttcattgaagtaaacgaggaagg |
9692480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 66 - 317
Target Start/End: Complemental strand, 9693013 - 9692762
Alignment:
| Q |
66 |
gtcagttgacagcttaaccagtctcatctttgctaatgcattatacttcaaaggagtttggaaacgaccgtttgatacttcaaaaacgaaggactatgat |
165 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| || || ||||||| |||| || ||| | ||| | || | || |||||| |
|
|
| T |
9693013 |
gtcagttgacagcttaaccagactcatctttgctaatgcattgtattttaaaggagcatggagtaatccttttcctgcttggaggacaagcgaatatgat |
9692914 |
T |
|
| Q |
166 |
tttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtccttggtcttc |
265 |
Q |
| |
|
||| |||||| ||||||| ||||| |||||||| ||||||| |||||| | |||||||||| || ||||||||||||||||||| ||| |||||| |
|
|
| T |
9692913 |
tttcaccttccgaatggcagctcagtcaaggttccttttatgagcagcaaccttgatcagtttattagagcttttgatggttttaaagttcttcgtcttc |
9692814 |
T |
|
| Q |
266 |
cttacaaacaaggcaatgataagcgtgcattctctatttacttttttcttcc |
317 |
Q |
| |
|
|||| || |||| || ||||||| ||||||||| ||| |||||||||| |
|
|
| T |
9692813 |
cttataattaaggaaaaaataagcgacaattctctatgtacatttttcttcc |
9692762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 505 - 599
Target Start/End: Complemental strand, 9675552 - 9675458
Alignment:
| Q |
505 |
ggaggtttgacaaaaatggtggactctcctataagtcaagaactttctgttaccagcatatttcagaagtctttcattgaattaaatgaagaagg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||| | | ||||||| |||||||| ||| ||||||||| |||||| ||||||| ||||||| ||||| |
|
|
| T |
9675552 |
ggaggtttgacaaaaatggtggactctcttgaaggtcaagacttttctgtttccaacatatttcacaagtctaccattgaagtaaatgaggaagg |
9675458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 9675899 - 9675788
Alignment:
| Q |
158 |
actatgattttgaccttctcaatggcaagtcagtaaaggttccctttatgaccagcaagaataatcagtttatcagttcttttgatggttttaaagtcct |
257 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||| || ||||||||||||| || ||| | |||||||||| || ||||||||||||||||||| || |
|
|
| T |
9675899 |
actatgattttcaccttctgaatggcagctcagtcaaagttccctttatgagcaccaaccttgatcagtttattagagcttttgatggttttaaagtgct |
9675800 |
T |
|
| Q |
258 |
tggtcttcctta |
269 |
Q |
| |
|
| |||| ||||| |
|
|
| T |
9675799 |
ttgtctccctta |
9675788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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