View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6935_low_3 (Length: 319)

Name: NF6935_low_3
Description: NF6935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6935_low_3
NF6935_low_3
[»] chr2 (13 HSPs)
chr2 (1-319)||(44895798-44896116)
chr2 (251-318)||(39391525-39391592)
chr2 (194-319)||(39602322-39602447)
chr2 (181-319)||(39398793-39398931)
chr2 (260-315)||(39495264-39495319)
chr2 (253-319)||(39381927-39381993)
chr2 (251-319)||(39369582-39369650)
chr2 (251-314)||(39427418-39427481)
chr2 (191-319)||(39129775-39129903)
chr2 (255-319)||(39199198-39199262)
chr2 (253-319)||(39467300-39467366)
chr2 (251-319)||(39220493-39220561)
chr2 (251-319)||(39450830-39450898)
[»] chr5 (1 HSPs)
chr5 (233-316)||(33559771-33559854)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 44895798 - 44896116
Alignment:
Q  1 ctccttcttttctgattcaagctcactgatacgacctttaagcttaattcttgattccaactcctttactattccttcaacgtgtttctcatttgactca 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44895798 ctccttcttttctgattcaagctcgctgatacgacctttaagcttaattcttgattccaactcctttactattccttcaacgtgtttctcatttgactca 44895897  T
Q  101 agcttctcctcccgtccttgatattgcttctgtttggactcaaattcctttattagagcataaactttactctttacttccattacttctagtaacttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44895898 agcttctcctcccgtccttgatattgcttctgtttggactcaaattcctttattagagcataaactttactctttacttctattacttctagtaacttct 44895997  T
Q  201 tcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacattcatcaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44895998 tcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacattcatcaat 44896097  T
Q  301 tttttgggaaagagccttg 319  Q
    |||||||||||||||||||    
T  44896098 tttttgggaaagagccttg 44896116  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 39391525 - 39391592
Alignment:
Q  251 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagcctt 318  Q
    |||||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||    
T  39391525 gcatcaagatctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagagcctt 39391592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 39602447 - 39602322
Alignment:
Q  194 aacttcttcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacatt 293  Q
    |||||||||||||  |||| ||| ||| ||||||||   |||| | || | | ||| |||||||| ||| ||||||||||||||||||||| |||| |||    
T  39602447 aacttcttccttttggactctaatttttctgcttgcccaccaattaatctgttcattgcatcaagctctatctctttggccttaagttccaaagtaaatt 39602348  T
Q  294 catcaattttttgggaaagagccttg 319  Q
    || |||||||||||||||||||||||    
T  39602347 cagcaattttttgggaaagagccttg 39602322  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 319
Target Start/End: Original strand, 39398793 - 39398931
Alignment:
Q  181 cattacttctagtaacttcttcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagt 280  Q
    |||||| | ||||||||||||||||||||||| |||  || |||||||   || |||| || | | ||| |||||||| ||||||||||||| ||  |||    
T  39398793 cattacctttagtaacttcttcctttccgactctaaaatttctgcttgtccgctaactaatattttcattgcatcaagctctttctctttggactctagt 39398892  T
Q  281 tccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||| |||||||  ||| |||||||| ||||||||||    
T  39398893 tccatattacattcggcaactttttgggcaagagccttg 39398931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 39495264 - 39495319
Alignment:
Q  260 tctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagc 315  Q
    ||||||||||||||||||||||||| || ||||| | |||||||||||||||||||    
T  39495264 tctttctctttggccttaagttccacagaacattgagcaattttttgggaaagagc 39495319  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 39381927 - 39381993
Alignment:
Q  253 atcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||| ||| ||||||||||||||||||||| | || ||||| |||||| ||||||||||||||||    
T  39381927 atcaagctctatctctttggccttaagttccaaaataaattcagcaatttgttgggaaagagccttg 39381993  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 39369650 - 39369582
Alignment:
Q  251 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||||| ||| ||||||||||| ||| ||||| ||||  |||| |||||||||||||||||||||||    
T  39369650 gcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagagccttg 39369582  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 39427418 - 39427481
Alignment:
Q  251 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagag 314  Q
    |||||| | ||||||||||| | ||||||||||| |||||||||| |||||||| |||||||||    
T  39427418 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaagag 39427481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 319
Target Start/End: Complemental strand, 39129903 - 39129775
Alignment:
Q  191 agtaacttcttcctttccgactgtaactttgctgcttgcatgccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtac 290  Q
    ||||||||||||||||| |||| ||   || |||||||  || ||| | |||||| ||| |||||| | ||||||||||||  ||| ||||||| |||||    
T  39129903 agtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacgctctttctctttgctcttgagttccacagtac 39129804  T
Q  291 attcatcaattttttgggaaagagccttg 319  Q
    | | | |||| |||||||||||| |||||    
T  39129803 actgagcaatattttgggaaagatccttg 39129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 39199198 - 39199262
Alignment:
Q  255 caaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||| ||||||| ||||||||||  ||||| |||| ||||| |||||| ||||||||||||||||    
T  39199198 caagctctttctgtttggccttatattccaaagtaaattcagcaatttgttgggaaagagccttg 39199262  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 39467366 - 39467300
Alignment:
Q  253 atcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||| ||||||||||||| || |||||||||| |||||| | ||| |||||| | ||||||||||    
T  39467366 atcaagctctttctctttggactcaagttccatattacatttagcaactttttgagtaagagccttg 39467300  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 39220561 - 39220493
Alignment:
Q  251 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||||| || |||||||||||||||   |||| || |  |||| |||||||||||||||||||||||    
T  39220561 gcatcaagctcgttctctttggccttacagtccaaagcaagttcagcaattttttgggaaagagccttg 39220493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 39450898 - 39450830
Alignment:
Q  251 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagccttg 319  Q
    |||||||| ||| ||||||||||||||  ||  | |||| ||||| || ||||||||||||||||||||    
T  39450898 gcatcaagttctatctctttggccttacatttaaaagtaaattcagcatttttttgggaaagagccttg 39450830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Complemental strand, 33559854 - 33559771
Alignment:
Q  233 ccaactgatttctccatagcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagagcc 316  Q
    |||||| |||| | ||| |||||||| |||||||||||| ||| |||||||| |||||||||| |||  |||||||||||||||    
T  33559854 ccaactaatttgttcatcgcatcaagatctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagagcc 33559771  T

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