View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6935_low_4 (Length: 285)
Name: NF6935_low_4
Description: NF6935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6935_low_4 |
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| [»] scaffold0014 (2 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 16697997 - 16697852
Alignment:
| Q |
18 |
cactagcacactagatatatgcagaacacattgagtgccttggcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatt |
117 |
Q |
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| T |
16697997 |
cactagcaaactagatatatgcagaacacattgagtgccttggcttgcaacatgtgtcattgaaatagaagaaggaattgtccttggtttgctggaaatt |
16697898 |
T |
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| Q |
118 |
tttcattcgatactgcttctgcacttaagtatcaattctagggaat |
163 |
Q |
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| T |
16697897 |
tttcattcgatactgcttctgcacttaagtattaattctagggaat |
16697852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 16697472 - 16697351
Alignment:
| Q |
155 |
ctagggaatgctctagtctatggcagaatagctcctttgtattgataaaatctatgggagaataatcccatttccctatctgttggtgataaaatgcata |
254 |
Q |
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| T |
16697472 |
ctagtgaatgctctagtctatggcagaatagctcctttgtattgataaaatctatgggagaataatcccatttctctatctgttggtgataaaatgcata |
16697373 |
T |
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| Q |
255 |
aagataggttgtgtatgatgtc |
276 |
Q |
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| T |
16697372 |
aagataggttgtgtatgatgtc |
16697351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 38227527 - 38227420
Alignment:
| Q |
28 |
ctagatatatgcagaacacattgagtgccttggcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcattcga |
127 |
Q |
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| T |
38227527 |
ctagatatatgcagaacacatttactgccctggcttgcaacaggcatca-tgaaatggaagaagaattattcctgggtttgctggaaa-ttttcattcga |
38227430 |
T |
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| Q |
128 |
tactgcttct |
137 |
Q |
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|||||||||| |
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| T |
38227429 |
tactgcttct |
38227420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 103356 - 103225
Alignment:
| Q |
32 |
atatatgcagaacacattgagtgccttggcttgcaacatgtgtcattgaaatggaagaaggaattgtccttggtttgctggaaatttttcattcgatact |
131 |
Q |
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| T |
103356 |
atatacgcataacacatttaatgccttgtatttcaacaggcgtcattgaaatggaagaataaattatacctggcttgtttgaaaattttcatttgatact |
103257 |
T |
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| Q |
132 |
gcttctgcacttaagtatcaattctagggaat |
163 |
Q |
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| T |
103256 |
gattctgcactatagtattaattctagggaat |
103225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 102817 - 102772
Alignment:
| Q |
160 |
gaatgctctagtctatggcagaatagctcctttgtattgataaaat |
205 |
Q |
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| T |
102817 |
gaatgatctagtctatggcagaatagctccttcgtatcgataaaat |
102772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 18894325 - 18894281
Alignment:
| Q |
200 |
taaaatctatgggagaataatcccatttccctatctgttggtgat |
244 |
Q |
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| T |
18894325 |
taaaatctaagggcgaataatcccatttccctatcggttggtgat |
18894281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 19831 - 19801
Alignment:
| Q |
246 |
aaatgcataaagataggttgtgtatgatgtc |
276 |
Q |
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| T |
19831 |
aaatgcataaagataggttgtgtatgatgtc |
19801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 32880 - 32910
Alignment:
| Q |
246 |
aaatgcataaagataggttgtgtatgatgtc |
276 |
Q |
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| T |
32880 |
aaatgcataaagataggttgtgtatgatgtc |
32910 |
T |
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