View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6935_low_5 (Length: 275)
Name: NF6935_low_5
Description: NF6935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6935_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 10599610 - 10599860
Alignment:
| Q |
19 |
atcaaccaaactacacctaacacacaaatccaaaaccaaacccgacctaataacccacgaatgcaactccttcccaagcgacaaaaactgaatctcagca |
118 |
Q |
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| T |
10599610 |
atcaaccaaactacacccaacacacaaatccaaaaccaaacccgacctaataacccacgaatgcaactccttcccaagcgacaaaaactgaatctcagca |
10599709 |
T |
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| Q |
119 |
cacacagatatcaacccagttaacgtaaacctatccggaacatacccactactcaccaacatctccaaaaacaaatcaatcgcatcatcattataaccat |
218 |
Q |
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|| || |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
10599710 |
caaaccgatatcaacccagtcaacgtaaatctatccggcacatacccactactcaccaacatttccaaaaacaaatcaatcgcttcatcattataaccat |
10599809 |
T |
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| Q |
219 |
attgagctaacctagtaatcatcaaagtccacgtaacaacattcttctcac |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599810 |
attgagctaacctagtaatcatcaaagtccacgtaacaacattcttctcac |
10599860 |
T |
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