View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_high_12 (Length: 246)
Name: NF6936_high_12
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8451858 - 8452081
Alignment:
| Q |
1 |
tattatatcttacaatatattcagtgagcagaggtgaaacaagggacacacaaatgtggcatacctcgagtttctgcattttctttgtcacttcatgctt |
100 |
Q |
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| T |
8451858 |
tattatatcttataatatattcagtgagcagaggtgtaacaagggacacacaaatgtggcatacctcgagtttctgcattttctttgtcacttcatgctt |
8451957 |
T |
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| Q |
101 |
gaggctctcaatatcctataaaaatgcatgcgtgaagattaatcaagtaacttatttattacgaagtaattc--aaaataaaaagtagagcgaaaaagaa |
198 |
Q |
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| T |
8451958 |
gaggctctcaatatcctataaaaatgcatgcgtgaagattaatcaagtaac----ttattacgaagtaattcaaaaaaaaaaaagtagagcgaaaaagaa |
8452053 |
T |
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| Q |
199 |
tttgtatagtacattctgacgaagtcta |
226 |
Q |
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| T |
8452054 |
tttgtatagtacattctgtcgaagtcta |
8452081 |
T |
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