View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_high_14 (Length: 244)
Name: NF6936_high_14
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1249096 - 1249322
Alignment:
| Q |
1 |
cactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaagcttgtaggcctagatgtaagccacaaccagctt |
100 |
Q |
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| T |
1249096 |
cactttagggcttaataacaaccatttaaccggtcgggttccggcttacctcggccgccttcctaagcttgtaggcctagatgtgagccacaaccagctt |
1249195 |
T |
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| Q |
101 |
tgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgca |
200 |
Q |
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| T |
1249196 |
tgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtggtgctcccttggccccttgca |
1249295 |
T |
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| Q |
201 |
aggcctagttaactaaagggatgcatg |
227 |
Q |
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| T |
1249296 |
agacctagttaactaaagggatgcatg |
1249322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 12079078 - 12078961
Alignment:
| Q |
81 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
180 |
Q |
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| T |
12079078 |
atgtgagcaacaaccaactttgtggtcctataccgacagtcggagggaagttgcaagggtttgatccatcgtcgttttcgcataataagtgtttgtgtgg |
12078979 |
T |
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| Q |
181 |
tgctcccttggccccttg |
198 |
Q |
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| T |
12078978 |
ttctcctttgcccccttg |
12078961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 12079526 - 12079465
Alignment:
| Q |
5 |
ttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
66 |
Q |
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| T |
12079526 |
ttagggcttaataacaaccaattaaccggtccaattccagcttacctcggccgccttcctaa |
12079465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 12096166 - 12096105
Alignment:
| Q |
5 |
ttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
66 |
Q |
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| T |
12096166 |
ttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaa |
12096105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 12095718 - 12095613
Alignment:
| Q |
81 |
atgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgcaagggtttgatccgtcgtggtttgagaataataagtgtttatgtgg |
180 |
Q |
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| T |
12095718 |
atgtgagctacaaccagcttttcggtcctataccgacagttggagggaagttgcaagagtttgatccatcgtcgttttcgcataataagggcttgtgtgg |
12095619 |
T |
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| Q |
181 |
tgctcc |
186 |
Q |
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| |||| |
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| T |
12095618 |
ttctcc |
12095613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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