View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_high_15 (Length: 231)

Name: NF6936_high_15
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_high_15
NF6936_high_15
[»] chr7 (3 HSPs)
chr7 (5-231)||(1248857-1249083)
chr7 (14-228)||(12079546-12079760)
chr7 (14-228)||(12096186-12096400)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 1248857 - 1249083
Alignment:
Q  5 acaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1248857 acaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctaccatacctggagaccctca 1248956  T
Q  105 tattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1248957 tattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccgg 1249056  T
Q  205 tcctatccccgattactttagcaagct 231  Q
    ||||||||| |||||||||||||||||    
T  1249057 tcctatccctgattactttagcaagct 1249083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12079760 - 12079546
Alignment:
Q  14 cgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgca 113  Q
    |||||||||||||| ||||| || ||||||||||| || |||||||| ||||| |||||||| || || ||||| ||||| ||||||||||| || |||     
T  12079760 cgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctaccttacctcgagaccctcattttacgcc 12079661  T
Q  114 acctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccc 213  Q
     ||| |||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||    
T  12079660 tcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccc 12079561  T
Q  214 cgattactttagcaa 228  Q
     ||||||||||||||    
T  12079560 tgattactttagcaa 12079546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12096400 - 12096186
Alignment:
Q  14 cgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgca 113  Q
    |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || ||||| ||||| ||||||||||| || |||     
T  12096400 cgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctaccttacctcgagaccctcatttttcgcc 12096301  T
Q  114 acctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccc 213  Q
     |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||    
T  12096300 tcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccc 12096201  T
Q  214 cgattactttagcaa 228  Q
     ||||||||||||||    
T  12096200 tgattactttagcaa 12096186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University