View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_high_5 (Length: 415)
Name: NF6936_high_5
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 18161058 - 18161225
Alignment:
| Q |
236 |
cgatggctttagaagctgaaatttcttctctgttcgaaagaacgatcagaatgttaagcctttcacattcatcttcaaacaacaccaacccagatcatag |
335 |
Q |
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| T |
18161058 |
cgatggctttagaagcagaaatttcttctctgttcgaaagaatgatcagaatgttaagcctttcacattcatcttcaaacaacacagacccagatcatag |
18161157 |
T |
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| Q |
336 |
ttccgattcccatgccacggaagattccaccgctgacagaatcatcttggtgaacacattcacacagg |
403 |
Q |
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| T |
18161158 |
ttccgattcccatgccacggaagattccaccactgacagaatcatcttggtgaacacattcacacagg |
18161225 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 18160875 - 18160943
Alignment:
| Q |
38 |
gtgattaggaaataaatgacactacaatctcacatgcaccaaataccatgttccagatccttcgacaac |
106 |
Q |
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| T |
18160875 |
gtgattaggaaataaatgacaccacaatctcacatgcacctaataccatgttccagatccttcgacaac |
18160943 |
T |
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