View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_high_9 (Length: 326)
Name: NF6936_high_9
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 9740975 - 9740686
Alignment:
| Q |
22 |
atgctttgcaatggaatgaaaatataaa-ttttctgactactttatgtgtttcttatatttacagcgtgcattagagttgaagaggaagttgatgatgca |
120 |
Q |
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| T |
9740975 |
atgcttggcaatggaatgaacatataaaattttctgactactttatgtgtttcttatatttacagcgtgcgttagagttgaagaggaagttgttgatgca |
9740876 |
T |
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| Q |
121 |
gccttatgcaaattacaaataaatgttatgttgaataaaataaagagtgggggaagctgagcttacatacttctcctcttatttatgtattaactaaata |
220 |
Q |
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| T |
9740875 |
gccttatgcaaattacaaataaatgttatgttgaataaaataaagagtggggaaagctgagcttacatacttctcctcttatttatgtattaactaaata |
9740776 |
T |
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| Q |
221 |
atacaaatcgtccacat---------gtatgtatcatgtatggatttgatggtccccttgaatgagttatataatatgctattttatttg |
301 |
Q |
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| T |
9740775 |
atacaaatctttcacatatatgtaccatatgtatcatgtatggatttgatggtctccttgaatgagttatataatatgctattttatttg |
9740686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 9753894 - 9753831
Alignment:
| Q |
22 |
atgctttgcaatggaatgaaaatataaa-ttttctgactactttatgtgtttcttatatttaca |
84 |
Q |
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| T |
9753894 |
atgcttggcaatggaatgaaaatataaaattttctgacaactttatgtgtttcttatacttaca |
9753831 |
T |
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