View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_1 (Length: 680)
Name: NF6936_low_1
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 180 - 672
Target Start/End: Original strand, 37604242 - 37604733
Alignment:
| Q |
180 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604242 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
37604341 |
T |
|
| Q |
280 |
tacctgctgttatcgtatcccataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctc |
379 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37604342 |
tacctgctgttatcgtatcccataacctagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctc |
37604441 |
T |
|
| Q |
380 |
acagcaggggcagtagtccgaagaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttg |
479 |
Q |
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|||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||| |
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| T |
37604442 |
acagaaggggcagtagtccgaagaaggga-ccccccttccttgaagtcttatatatgcgaagggagaacacccctcaacaacctccataaaaaaactttg |
37604540 |
T |
|
| Q |
480 |
atccgttgaggtatgtgcagattccacattctcatccaatctcccggcattctatactccacattatcaatgagagtttccatatcatacatgtatgcag |
579 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37604541 |
atccgttgaggtatgtgcagattccacattctcgtccaatctcccggcattctatactccacattatgaatgagagtttccatatcatacatgtatgcag |
37604640 |
T |
|
| Q |
580 |
acttcactgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcggatttcttctc |
672 |
Q |
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| T |
37604641 |
acttcgctgtataatgccctttgttaatgaatttccatattaacttatctgctccgtctgaattggttaatgctaagttgcggatttcttctc |
37604733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 37604156 - 37604233
Alignment:
| Q |
20 |
gcagccacctgatattatgctgctcttcctgtttctgttcgccatatttttggtgttttaggacataatttcccactgata |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37604156 |
gcagccacctgatattatgctgctctccctgtttctgttcgccatatttttggtgttttaggac---atttcccactgata |
37604233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 92 - 534
Target Start/End: Original strand, 8178542 - 8178980
Alignment:
| Q |
92 |
ccactgataaatagctttacgcgctaactggacaacaacaccaacattctgaacttcgccctcccaaactttatcattacggcaccttcataaacaccac |
191 |
Q |
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||||||| ||||| ||| ||||||| ||| ||| | | || ||||||||| || ||||| ||||| |||||||||||||||| | |||| ||||| |
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| T |
8178542 |
ccactgaaaaataccttcgcgcgctagctgtacagccatacgaacattctgtacctcgccttcccacactttatcattacggcggcgccatatgcaccat |
8178641 |
T |
|
| Q |
192 |
aacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgtta |
291 |
Q |
| |
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|||| ||||||||||||||||| || | |||| |||||||||| |||| || ||| |||||||| |||||||| ||||| | |||||||||||| || |
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| T |
8178642 |
aacaccgctgctatgtccctgcacaaatgattttgcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctgcta |
8178741 |
T |
|
| Q |
292 |
tcgtatcccataacccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagcaggggca |
391 |
Q |
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| |||||||| ||||||||||||||| || |||||| | || |||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
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| T |
8178742 |
ttacatcccatagcccagcttcaatccatacttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggca |
8178841 |
T |
|
| Q |
392 |
gtagtccgaagaaggaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggt |
491 |
Q |
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| | |||||| |||| | | ||||||||||||| ||| ||| || |||||||| | || |||||| ||||||||| ||||||| |
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| T |
8178842 |
gcaatccgaacaagggaccccctat--cttgaagtctcattc--gcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggt |
8178937 |
T |
|
| Q |
492 |
atgtgcagattccacattctcatccaatctcccggcattctat |
534 |
Q |
| |
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|| || ||||||||||||||||||||||| |||| || ||||| |
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| T |
8178938 |
atatgaagattccacattctcatccaatcacccgacactctat |
8178980 |
T |
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