View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_low_11 (Length: 292)

Name: NF6936_low_11
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_low_11
NF6936_low_11
[»] chr3 (4 HSPs)
chr3 (41-284)||(5381378-5381621)
chr3 (41-284)||(13721145-13721388)
chr3 (124-203)||(24341603-24341682)
chr3 (12-43)||(5381242-5381273)
[»] scaffold0015 (2 HSPs)
scaffold0015 (41-284)||(27560-27803)
scaffold0015 (12-43)||(27424-27455)
[»] chr8 (2 HSPs)
chr8 (41-284)||(88286-88529)
chr8 (12-43)||(88634-88665)
[»] chr7 (4 HSPs)
chr7 (41-284)||(11713140-11713383)
chr7 (41-282)||(13162351-13162592)
chr7 (12-43)||(11713488-11713519)
chr7 (12-43)||(13162697-13162728)
[»] chr1 (4 HSPs)
chr1 (41-284)||(42377158-42377401)
chr1 (41-284)||(14474908-14475151)
chr1 (41-284)||(2795158-2795401)
chr1 (12-43)||(14474772-14474803)
[»] chr6 (2 HSPs)
chr6 (43-284)||(16775804-16776045)
chr6 (15-43)||(16775669-16775697)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 5381378 - 5381621
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5381378 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 5381477  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5381478 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 5381577  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5381578 atcataaattggctctaaaacttcttctttttctggttcatctc 5381621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 13721145 - 13721388
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||||||||    
T  13721145 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacctttccagtagtggtgcaacgagtatgga 13721244  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13721245 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcaacaacaatgagctcttc 13721344  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13721345 atcataaattggctctaacacttcttctttttctggttcatctc 13721388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 24341603 - 24341682
Alignment:
Q  124 ggtgcaacgagtatggaaaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatca 203  Q
    ||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||||||| ||||||| |||| | ||||||    
T  24341603 ggtgcaacgagtatgaaaaatgtttttcctcaagtaatgctcttcttgtgctgacatcatgtgtagccttcctatgatca 24341682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 5381242 - 5381273
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  5381242 gacatcacaccaaacttgatcttgatacttct 5381273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 27560 - 27803
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27560 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 27659  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27660 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 27759  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27760 atcataaattggctctaacacttcttctttttctggttcatctc 27803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 27424 - 27455
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  27424 gacatcacaccaaacttgatcttgatacttct 27455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 88529 - 88286
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  88529 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 88430  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88429 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 88330  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  88329 atcataaattggctctaacacttcttctttttctggttcatctc 88286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 88665 - 88634
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  88665 gacatcacaccaaacttgatcttgatacttct 88634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 11713383 - 11713140
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11713383 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 11713284  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11713283 aaatgtttttcctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 11713184  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11713183 atcataaattggctctaacacttcttctttttctggttcatctc 11713140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 282
Target Start/End: Complemental strand, 13162592 - 13162351
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  13162592 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataatatcacaaacttttccagcagtggtgcaacgagtatgga 13162493  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
      || |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13162492 tgatgtttttcgtcaaccaatgctcttcttgggctgacatcgcgtgtaggcttcgtctgaacaccagagactcgccatgatcagcaacaatgagctcttc 13162393  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatc 282  Q
    ||||||||||||||||||| || | ||||||||  |||||||    
T  13162392 atcataaattggctctaactctacatctttttcatgttcatc 13162351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 11713519 - 11713488
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  11713519 gacatcacaccaaacttgatcttgatacttct 11713488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 13162728 - 13162697
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  13162728 gacatcacaccaaacttgatcttgatacttct 13162697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 42377401 - 42377158
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42377401 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatgga 42377302  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42377301 aaatgtttttcctcaaccaatactcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 42377202  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42377201 atcataaattggctctaacacttcttctttttctggttcatctc 42377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 14474908 - 14475151
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |    
T  14474908 tctaaattctctaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccagcagtggtgcaacgagtatgaa 14475007  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14475008 aaatgtttttgctcaaccaatgctcttcttgagctgacatcgcgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 14475107  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14475108 atcataaattggctctaacacttcttctttttctggttcatctc 14475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 2795158 - 2795401
Alignment:
Q  41 tctaacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatgga 140  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  2795158 tctaacttctccaccatgtagttcgacaccacattttcacaactaccactgtctattataacatcacaaacttttccggcagtggtgcaacgagtatgga 2795257  T
Q  141 aaatatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttc 240  Q
    |||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2795258 aaatgtttttcctcaacaaatgttcttcttgagctgacatcgcgtgtaggcttcgtctgatcactagagactcgccatgatcagcaacaatgagctcttc 2795357  T
Q  241 atcataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2795358 atcataaattggctctaacacttcttctttttctggttcatctc 2795401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 14474772 - 14474803
Alignment:
Q  12 gacatcacaccaaacttgatcttgatacttct 43  Q
    ||||||||||||||||||||||||||||||||    
T  14474772 gacatcacaccaaacttgatcttgatacttct 14474803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 43 - 284
Target Start/End: Original strand, 16775804 - 16776045
Alignment:
Q  43 taacttctctaccatgtagttcgacaccacattttcacaactaccactatctattataacatcacaaacttttccagcaatggtgcaacgagtatggaaa 142  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16775804 taacttctctaccatgtagttcgacaccacattttcaaaactaccactatctattataacatcacaaacttttccagcagtggtgcaacgagtatggaaa 16775903  T
Q  143 atatttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtctgatcaccagagactcgccatgatcagcaacaatgagctcttcat 242  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  16775904 atgtttttcctcaaccaatgctcttcttgagctgacatcgtgtgtaggcttcgtcttatcactagagattcgccatgatcagcaacaatgagctcttcat 16776003  T
Q  243 cataaattggctctaacacttcttctttttctggttcatctc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16776004 cataaattggctctaacacttcttctttttctggttcatctc 16776045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 16775669 - 16775697
Alignment:
Q  15 atcacaccaaacttgatcttgatacttct 43  Q
    |||||||||||||||||||||||||||||    
T  16775669 atcacaccaaacttgatcttgatacttct 16775697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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