View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_12 (Length: 260)
Name: NF6936_low_12
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 11861050 - 11860827
Alignment:
| Q |
19 |
ccttcaaggatggaaagaatatcgatgtatcagcttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccagg |
118 |
Q |
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| T |
11861050 |
ccttcaaggatggaaagaattttggtgtattagtgtgattgttctctgcaatgaatttcaaagagtccaatctccgaagttggagaaccttgagatgtgg |
11860951 |
T |
|
| Q |
119 |
aagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagcgagccaattaaacaacatttgg |
218 |
Q |
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| T |
11860950 |
aagctgatccattggtgggagaaatttgcaattgggacagtcgttcaaggtaaatttaccaaggaattgaagtgaagcgagccaattagacaacatgtgg |
11860851 |
T |
|
| Q |
219 |
ccatggtacccaacaactaatagc |
242 |
Q |
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||||||||||| |||||||||||| |
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| T |
11860850 |
ccatggtacccgacaactaatagc |
11860827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 11828918 - 11828693
Alignment:
| Q |
19 |
ccttcaaggatggaaagaatatcgatgtatcagcttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccagg |
118 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
11828918 |
ccttcaaggatggaaagaatataggtgtatcagcttgattgttctttgcaataaatttcaaagagtccaatctccgaagttggagaaccttgagatgtgg |
11828819 |
T |
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| Q |
119 |
aagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaaggaattgaagtgaagcgagccaattaaacaacatttgg |
218 |
Q |
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| T |
11828818 |
aagctcatccattggtgggagaaattcgcatttgggacagtcattcaaggtaaacttaacaaggcattgaagtgaagcgagccagttagacaatgtgtga |
11828719 |
T |
|
| Q |
219 |
ccatggtacccaacaactaatagcac |
244 |
Q |
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|| | |||||| |||||||||||||| |
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| T |
11828718 |
ccgttgtacccgacaactaatagcac |
11828693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 11901516 - 11901645
Alignment:
| Q |
52 |
cttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaatt |
151 |
Q |
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|||||||||| | || ||||||||| | |||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| || |
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| T |
11901516 |
cttgattgttttctgcaatgaatttcagagagtccagtctccgaatttggagaaccttgagatgtggaagctgatccattggggggagaaactcgcattt |
11901615 |
T |
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| Q |
152 |
gggacagtcgttcaaggtaaacttaacaag |
181 |
Q |
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| T |
11901616 |
gggacagtcgttcaaggtaaacttaacaag |
11901645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 12039785 - 12039643
Alignment:
| Q |
52 |
cttgattgttctttgtaatgaattttaaagagtccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaatt |
151 |
Q |
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|||||||||| |||| ||||||||| | |||||||| || ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| || |
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| T |
12039785 |
cttgattgttttttgcaatgaatttcagtgagtccaaccttcgaagttggagaaccttgagatgtggaagctcatccattggcgggagaaattcgcattt |
12039686 |
T |
|
| Q |
152 |
gggacagtcgttcaaggtaaacttaacaaggaattgaagtgaa |
194 |
Q |
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| T |
12039685 |
tgggcagtcattcaaggtaaacttaacaagacaatgaagtgaa |
12039643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 11732657 - 11732539
Alignment:
| Q |
84 |
tccaatctccgaagttggagaaccttgagaccaggaagctgatccattggtgggagaaattcgcaattgggacagtcgttcaaggtaaacttaacaagga |
183 |
Q |
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||||| |||||||| |||||| |||||||| ||||| ||||| ||||| || ||||||| ||| || |||||||| |||||||||||||||||||| |
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| T |
11732657 |
tccaacctccgaagatggagagccttgagatttggaaggtgatcgattggcggtagaaatttgcatttaggacagtcactcaaggtaaacttaacaaggc |
11732558 |
T |
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| Q |
184 |
attgaagtgaagcgagcca |
202 |
Q |
| |
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||||||| ||| ||||||| |
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| T |
11732557 |
attgaagcgaatcgagcca |
11732539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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