View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_low_13 (Length: 260)

Name: NF6936_low_13
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_low_13
NF6936_low_13
[»] chr7 (9 HSPs)
chr7 (29-241)||(23983290-23983502)
chr7 (155-245)||(36449287-36449376)
chr7 (107-210)||(9107308-9107410)
chr7 (183-245)||(22567909-22567970)
chr7 (137-245)||(9427899-9428007)
chr7 (197-245)||(28534308-28534355)
chr7 (26-69)||(36449164-36449207)
chr7 (37-123)||(8745244-8745330)
chr7 (34-242)||(3478440-3478647)
[»] chr2 (17 HSPs)
chr2 (11-236)||(10173368-10173593)
chr2 (29-245)||(16952162-16952380)
chr2 (29-245)||(17022827-17023045)
chr2 (29-245)||(17060133-17060351)
chr2 (98-219)||(20572226-20572346)
chr2 (37-123)||(34230292-34230378)
chr2 (166-245)||(27879932-27880011)
chr2 (162-242)||(12343037-12343116)
chr2 (192-241)||(4974992-4975042)
chr2 (192-241)||(4992900-4992950)
chr2 (183-245)||(13699083-13699144)
chr2 (184-245)||(22884931-22884991)
chr2 (138-241)||(27740153-27740255)
chr2 (37-123)||(7696053-7696139)
chr2 (39-109)||(41086715-41086785)
chr2 (196-245)||(25504706-25504754)
chr2 (167-242)||(41086572-41086648)
[»] chr1 (14 HSPs)
chr1 (29-245)||(16577344-16577561)
chr1 (40-243)||(41126271-41126462)
chr1 (166-245)||(38548856-38548934)
chr1 (156-242)||(16148987-16149073)
chr1 (166-245)||(38544535-38544613)
chr1 (37-123)||(16147649-16147735)
chr1 (162-245)||(32882584-32882668)
chr1 (37-123)||(6583120-6583206)
chr1 (183-245)||(17033810-17033871)
chr1 (37-123)||(31290923-31291009)
chr1 (155-234)||(10785252-10785330)
chr1 (162-190)||(24659146-24659174)
chr1 (163-245)||(31290799-31290880)
chr1 (138-214)||(49820311-49820387)
[»] chr5 (9 HSPs)
chr5 (20-245)||(17853851-17854073)
chr5 (90-242)||(26045746-26045901)
chr5 (155-239)||(33258665-33258750)
chr5 (183-243)||(39183985-39184044)
chr5 (196-245)||(8731153-8731201)
chr5 (155-242)||(14302226-14302314)
chr5 (166-214)||(24072094-24072142)
chr5 (20-68)||(24072226-24072274)
chr5 (163-211)||(39024259-39024306)
[»] chr6 (5 HSPs)
chr6 (29-241)||(32935126-32935337)
chr6 (37-120)||(20701710-20701793)
chr6 (162-242)||(20701583-20701664)
chr6 (103-211)||(21266263-21266369)
chr6 (138-214)||(33968443-33968518)
[»] chr4 (10 HSPs)
chr4 (107-211)||(12296322-12296426)
chr4 (34-237)||(19673188-19673392)
chr4 (34-237)||(19815009-19815213)
chr4 (155-242)||(22810943-22811029)
chr4 (155-242)||(48098546-48098632)
chr4 (155-242)||(49747739-49747826)
chr4 (170-245)||(20632265-20632339)
chr4 (162-242)||(38637016-38637095)
chr4 (37-123)||(49528163-49528249)
chr4 (166-211)||(46487477-46487522)
[»] scaffold1613 (1 HSPs)
scaffold1613 (166-245)||(814-892)
[»] chr3 (12 HSPs)
chr3 (37-180)||(39021122-39021267)
chr3 (11-214)||(823246-823450)
chr3 (155-214)||(14879648-14879708)
chr3 (198-245)||(32010016-32010063)
chr3 (37-123)||(25647777-25647863)
chr3 (164-245)||(37123601-37123683)
chr3 (162-242)||(14194152-14194229)
chr3 (142-187)||(23328188-23328233)
chr3 (166-245)||(25594328-25594406)
chr3 (138-245)||(27399140-27399246)
chr3 (164-239)||(28937498-28937574)
chr3 (163-242)||(33143733-33143813)
[»] chr8 (6 HSPs)
chr8 (121-245)||(17720503-17720626)
chr8 (162-242)||(10248349-10248430)
chr8 (37-123)||(17656906-17656992)
chr8 (155-242)||(12197857-12197945)
chr8 (155-242)||(12442285-12442373)
chr8 (112-252)||(15906839-15906978)
[»] scaffold0063 (1 HSPs)
scaffold0063 (37-245)||(58218-58430)
[»] scaffold0050 (1 HSPs)
scaffold0050 (155-242)||(36920-37005)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 23983290 - 23983502
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  23983290 tttttgtgttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgag 23983389  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 228  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||    
T  23983390 gaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtct 23983489  T
Q  229 gttttaggtggtg 241  Q
    |||||||||||||    
T  23983490 gttttaggtggtg 23983502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 36449287 - 36449376
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||| | ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||  ||||| ||||||||||||||||    
T  36449287 ttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttgttt-cgtgaagtagtctattttaggtggtgatgt 36449376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 9107308 - 9107410
Alignment:
Q  107 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 206  Q
    |||| |||||||||||||||||||| | |  |||||||||||| ||  || ||| ||| ||||||||| ||||||||||||||| |||||||||| || |    
T  9107308 gtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T
Q  207 ggtc 210  Q
    ||||    
T  9107407 ggtc 9107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 22567970 - 22567909
Alignment:
Q  183 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||| ||| |||||||||||||| |||| ||||||  ||||||||||||||||||||||    
T  22567970 tggttatggataccgtttttcagtggttgttt-cgtgaaagagtctgttttaggtggtgatgt 22567909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 245
Target Start/End: Complemental strand, 9428007 - 9427899
Alignment:
Q  137 atttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 236  Q
    ||||||||||||| | |  | ||| ||| ||||||||||||| ||||||||||| ||||| ||||| |||||| || | ||||||  | | |||||||||    
T  9428007 atttcatttagagggatgctatttagggatgagtagtgacgacgggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttagg 9427908  T
Q  237 tggtgatgt 245  Q
    | |||||||    
T  9427907 tagtgatgt 9427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 28534355 - 28534308
Alignment:
Q  197 gtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  28534355 gtttttcagtggtcgttt-cgtgaaagagtctgttttaggtggtgatgt 28534308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 36449164 - 36449207
Alignment:
Q  26 ttatttttgtgttctttcggtgtatcggaggttgagaggtggtg 69  Q
    ||||||| || ||||||||||| |||||||||||||||||||||    
T  36449164 ttattttggttttctttcggtggatcggaggttgagaggtggtg 36449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 8745244 - 8745330
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| ||||||||| ||||||| |||  ||| | ||||| ||||  ||| ||| ||||||||||||| ||| ||||||||    
T  8745244 ttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtg 8745330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 3478440 - 3478647
Alignment:
Q  34 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 133  Q
    |||||||||||||| ||||||| | ||||||||| |  ||| ||||||| ||||| || |||  ||||| ||  ||| | | |||||||| ||||||  |    
T  3478440 gtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactg 3478539  T
Q  134 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 232  Q
     || ||| |||| |||  || |||||| ||||||||||||||||| || |||| ||| |||||| |||| |||| ||||| | |||||| | ||||||||    
T  3478540 ggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatcgcttttacagt-gtcgtattcgtgaagacgtctgttt 3478637  T
Q  233 taggtggtga 242  Q
     || ||||||    
T  3478638 gagttggtga 3478647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 10173593 - 10173368
Alignment:
Q  11 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 110  Q
    |||||||| ||||| || | || |||||||||||||| ||||||||| |||||||||||  ||  ||||||| ||| ||||||||| |||||||||||||    
T  10173593 agtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtgg 10173494  T
Q  111 ttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggt 209  Q
     ||| |||||||| ||||||  |||| ||| |||| |||  || |||||| ||||||||||||||||||| |||||  |||||||||||||| |||| ||    
T  10173493 ctcagctttggtgttgaggactgagagtttaattttgaggagtattcttt-ggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagt 10173395  T
Q  210 cgtttacgtgaataagtctgttttagg 236  Q
    ||||| | |||| | ||||||||||||    
T  10173394 cgttttcatgaagacgtctgttttagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 16952380 - 16952162
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  16952380 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 16952281  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 226  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  16952280 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 16952181  T
Q  227 ctgttttaggtggtgatgt 245  Q
    |||||||| ||||||||||    
T  16952180 ctgttttaagtggtgatgt 16952162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 17023045 - 17022827
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17023045 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17022946  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 226  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  17022945 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 17022846  T
Q  227 ctgttttaggtggtgatgt 245  Q
    |||||||| ||||||||||    
T  17022845 ctgttttaagtggtgatgt 17022827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 245
Target Start/End: Complemental strand, 17060351 - 17060133
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17060351 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17060252  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 226  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  17060251 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 17060152  T
Q  227 ctgttttaggtggtgatgt 245  Q
    |||||||| ||||||||||    
T  17060151 ctgttttaagtggtgatgt 17060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 20572226 - 20572346
Alignment:
Q  98 ttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg 197  Q
    ||||||||| ||||| | |||| ||||||||||  |||| |||||||||||| ||| |||||| | ||||||||||| |||| |||||||||| ||||||    
T  20572226 ttttcggatatggtttagctttagtgatgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgat-ggtggttatggatatcg 20572324  T
Q  198 tttttcagtggtcgtttacgtg 219  Q
    ||||||||||||||||| ||||    
T  20572325 tttttcagtggtcgttttcgtg 20572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 34230292 - 34230378
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||||| |||| |||| ||| ||||| ||||||| ||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtg 34230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 27880011 - 27879932
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||||  |||| ||||||||| || ||||||||||| |||||||| | ||||  ||||||||||||||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtgatgt 27879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 12343037 - 12343116
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    ||||||||||||||||||| ||||||  | ||||||||||| ||| |||||||| ||||||  |||||||||||||||||||    
T  12343037 ggggtgagtagtgacgatgagtggtt--ggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtggtga 12343116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 4974992 - 4975042
Alignment:
Q  192 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 241  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4974992 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4975042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 4992900 - 4992950
Alignment:
Q  192 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtg 241  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||    
T  4992900 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtg 4992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 13699144 - 13699083
Alignment:
Q  183 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||| ||||||||||||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgt 13699083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 22884991 - 22884931
Alignment:
Q  184 ggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||| || |||||| ||||||||||||| ||||||  ||||||||||||||||||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgttt-cgtgaaggagtctgttttaggtggtgatgt 22884931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 27740153 - 27740255
Alignment:
Q  138 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 237  Q
    |||||||||||| ||| || ||  ||| ||||||||| ||| | ||||||||| |||||||| ||||||||| |||| ||||||  ||| ||| ||||||    
T  27740153 tttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttcttcagtggtagttt-cgtgaaggagtttgtattaggt 27740251  T
Q  238 ggtg 241  Q
    ||||    
T  27740252 ggtg 27740255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 7696053 - 7696139
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| |||| |||| | |||||||||  ||| ||||||| ||||| ||| ||| |||  |||||||| ||||||||||||    
T  7696053 ttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtg 7696139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 41086785 - 41086715
Alignment:
Q  39 ctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtg 109  Q
    ||||||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| ||| |||| |||||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 25504754 - 25504706
Alignment:
Q  196 cgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||||||    
T  25504754 cgtttttcagtggtcgttt-cgtgaaagactctgttttaggtggtgatgt 25504706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 41086648 - 41086572
Alignment:
Q  167 gagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    ||||||||||||||||||||  || |||||||||||  |||||||| || ||| ||   ||||||||||||||||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 16577344 - 16577561
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||||| |||||||||||  || ||||||||||||||||||  ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||      
T  16577344 tttttgcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggt 16577443  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtc 227  Q
    ||  || | |||| ||||||| ||| |||||| || |||||||| |||||||  |||||||| |||||  ||||| ||||||||||| ||||||  ||||    
T  16577444 gactgaaagtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtc 16577543  T
Q  228 tgttttaggtggtgatgt 245  Q
    ||||||||||| ||||||    
T  16577544 tgttttaggtgatgatgt 16577561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 41126462 - 41126271
Alignment:
Q  40 tttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatt 139  Q
    |||||||| || ||||||||||||||| ||  ||| ||| ||| ||| | ||| ||| ||||| ||||||| |||||||||||||||||||  |||| ||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  140 tcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtgg-tcgtttacgtgaataagtctgttttaggtg 238  Q
    ||||||||||             |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| |||||||  ||||||||||||||    
T  41126362 tcatttagag-------------gggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtg 41126276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 38548934 - 38548856
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  ||||||||||||||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgttt-cgtgaaagagtctgttttaggtggtgatgt 38548856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 16148987 - 16149073
Alignment:
Q  156 tctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||||| ||||   ||||||||||||||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtga 16149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 38544613 - 38544535
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  ||||||||||||||||||||||    
T  38544613 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtgatgt 38544535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 16147649 - 16147735
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||  ||||||||| |||||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtg 16147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 32882584 - 32882668
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||||||||||||||||||||  || ||||||| ||| ||||| |||||| ||||||  |||| |||||||| ||||||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgt 32882668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6583206 - 6583120
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||| ||||  ||| ||| |||||||||| || ||| ||||||||    
T  6583206 ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtg 6583120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 17033810 - 17033871
Alignment:
Q  183 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||||||| ||||||| ||||||||||| ||||||  ||| ||||||||||||| ||||    
T  17033810 tggttatgtataccgtttttaagtggtcgttt-cgtgaaagagtatgttttaggtggtaatgt 17033871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 31291009 - 31290923
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| ||||||||| |||||||||||  ||  |  |||| ||||| ||| ||| ||||||||||||| ||| ||||||||    
T  31291009 ttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 31290923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 10785330 - 10785252
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgtttta 234  Q
    ||||| |||| |||||||||||||||||||||  || |||||| ||||||||  ||||||| ||||||  |||||||||||    
T  10785330 ttcttgcgggatgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 24659146 - 24659174
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatg 190  Q
    |||||||||||||||||||||||||||||    
T  24659146 ggggtgagtagtgacgatgggtggttatg 24659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 31290880 - 31290799
Alignment:
Q  163 gggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||||||| |||||  |  |||| ||||| |||||||||||| || |||  |||||| |||||||||||||||    
T  31290880 gggtgagtagtgacgatggatggtt--ggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtggtgatgt 31290799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 49820311 - 49820387
Alignment:
Q  138 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 214  Q
    |||||||||||| |||  | ||| ||| || || ||| ||| ||||||||||| |||||||||||||||| ||||||    
T  49820311 tttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt 49820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 17854073 - 17853851
Alignment:
Q  20 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaacttt 119  Q
    ||||| |||||||  ||||||||||||| | | || ||||||||||||||  ||  ||||||| ||| ||||||||  ||||||||||||| ||| || |    
T  17854073 ttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctat 17853975  T
Q  120 ggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtg 219  Q
    |||||||||||| | |  ||||||||||||  |||| |||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||| |||     
T  17853974 ggtgatgaggattg-gtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgttt-cgta 17853877  T
Q  220 aataagtctgttttaggtggtgatgt 245  Q
    ||  ||||||||||||  ||||||||    
T  17853876 aaggagtctgttttagaaggtgatgt 17853851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 242
Target Start/End: Complemental strand, 26045901 - 26045746
Alignment:
Q  90 atatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctt--tcggggtgagtagtgacgatgggtggtt 187  Q
    ||||||| |||||||| |||  |||||||||||| | ||||| |||| ||| |||| ||| ||| || ||  | ||||||||||||||||||||| |||     
T  26045901 atatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtg 26045802  T
Q  188 atgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
     || || |||||||| | |||||| ||| | |||| ||||||||||||||||||||    
T  26045801 ttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtga 26045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 239
Target Start/End: Complemental strand, 33258750 - 33258665
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 239  Q
    |||||| ||||||||||||| |||||| ||||  || ||||||||||| ||||||||| || |||||| |  ||||||||||||||    
T  33258750 ttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg 33258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 39184044 - 39183985
Alignment:
Q  183 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgat 243  Q
    |||||||| ||| ||||||||||||||||||| |||||   ||||||||||||||||||||    
T  39184044 tggttatggataccgtttttcagtggtcgttt-cgtgatagagtctgttttaggtggtgat 39183985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 8731153 - 8731201
Alignment:
Q  196 cgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||||||| ||||||  | ||||||||||||||||||||    
T  8731153 cgtttttcagtggtcgttt-cgtgaaagactctgttttaggtggtgatgt 8731201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 14302314 - 14302226
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| ||| |||||||||||||  ||||||  || ||||||||||| || ||||||||| || |||  | |||||||||||||||||    
T  14302314 ttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtga 14302226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 24072142 - 24072094
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 214  Q
    ||||||||||||||||||| | ||  ||||||||||| |||||||||||    
T  24072142 tgagtagtgacgatgggtgatcatagatatcgttttttagtggtcgttt 24072094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24072274 - 24072226
Alignment:
Q  20 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggt 68  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||||||    
T  24072274 ttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggt 24072226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 39024306 - 39024259
Alignment:
Q  163 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 211  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  39024306 gggtgagtagtgacgatgagtg-ttatggatatcgtttttcaatggtcg 39024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 241
Target Start/End: Complemental strand, 32935337 - 32935126
Alignment:
Q  29 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 128  Q
    |||| ||||||||||||||  ||  |||||| |||||||||  ||| | ||||| ||||||| ||||| |||||||||||   ||| |||||||||||||    
T  32935337 ttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgag 32935238  T
Q  129 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 228  Q
     |  | || |||||||||||| | | || ||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||| ||  |||||    
T  32935237 cactgtgagtttcatttagagggatgtttttt-ggggtcagtagtgatgatgggtggttatgtatatcgtttttgagggggcgttttcgttaaggagtct 32935139  T
Q  229 gttttaggtggtg 241  Q
     ||||||||||||    
T  32935138 attttaggtggtg 32935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 20701793 - 20701710
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttg 120  Q
    ||||||||||| ||||||||| ||||||| |||  ||| ||||||| ||||| ||| ||| |||||| |||||| |||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 20701664 - 20701583
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||||||||||||||||||| ||  || ||||||||||| ||||||| | || |||||||  ||||||| ||||||||||    
T  20701664 ggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtga 20701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 21266263 - 21266369
Alignment:
Q  103 ggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 202  Q
    |||||||| |||  ||||||| ||||||| |||  |||| |||| | |||| ||| || |||||||||||||||||| ||| ||| || || ||||||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagt-tttcttttacaacggtgttcctttggggtgagtagtgacgat-ggttgttctggatgtcgttttt 21266360  T
Q  203 cagtggtcg 211  Q
    |||||||||    
T  21266361 cagtggtcg 21266369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 33968518 - 33968443
Alignment:
Q  138 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgttt 214  Q
    |||||||||||| ||| || ||| ||| |||||||||| ||||  |||||||| ||| | |||||||||||||||||    
T  33968518 tttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccatttttcagtggtcgttt 33968443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 12296322 - 12296426
Alignment:
Q  107 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 206  Q
    |||| ||||||| |||||||||||  |||  |||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12296322 gtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagt 12296421  T
Q  207 ggtcg 211  Q
    |||||    
T  12296422 ggtcg 12296426  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 19673188 - 19673392
Alignment:
Q  34 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 133  Q
    |||||||||||||| ||||  ||| || || |||||  |||  |||||||||| | ||||||  ||||||||||||| | |||||||||| ||||||  |    
T  19673188 gtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactg 19673287  T
Q  134 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 232  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||| || ||||  || |||| | |||| |||||||| ||| |||||| | ||||||||    
T  19673288 agagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaagacgtctgttt 19673387  T
Q  233 taggt 237  Q
     ||||    
T  19673388 gaggt 19673392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 19815213 - 19815009
Alignment:
Q  34 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 133  Q
    |||||||||||||| | ||||||| ||||| |||||  |||  |||||| ||||| ||| ||  ||||| ||||||| | |||||||||| ||||||  |    
T  19815213 gtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactg 19815114  T
Q  134 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 232  Q
    ||| ||| || | |||  || |||||| ||||||||||||||| | || ||||  || ||||| ||||| | |||||| ||| |||||| | ||||||||    
T  19815113 agagtttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgttt 19815014  T
Q  233 taggt 237  Q
     ||||    
T  19815013 gaggt 19815009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 22811029 - 22810943
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| |||||||||||||||||||| ||||   | ||||||||||| ||||||||| || ||||||  ||||||||||||| |||||    
T  22811029 ttctttgggggtgagtagtgacgatggatggt--aggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtga 22810943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 48098546 - 48098632
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| ||||||||||||||||| |||| || ||| ||||||||||| ||||||||||||  ||||  |||  |||||||||||||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtga--aagagtgttttaggtggtga 48098632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 49747739 - 49747826
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| ||||||||||||||| ||||| |||  || || |||||||| || ||||||||| ||||||  |||||||||||||||||||    
T  49747739 ttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtga 49747826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 20632339 - 20632265
Alignment:
Q  170 tagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||| ||| |||||||||||| ||||||| ||||||||| ||||  |||||  ||||||||||||| ||||||||    
T  20632339 tagtggcgacgggtggttatgtgtatcgttcttcagtggttgttt-tgtgaaagagtctgttttagggggtgatgt 20632265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 38637095 - 38637016
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||||||||||||||||||||||  || ||||| ||||| ||| ||| |||| ||||||  ||| |||||||||||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtga 38637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 49528163 - 49528249
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| ||||||||| | |||||||||  ||  ||||||| ||||| |||  || ||| ||||||||||||| ||||||||    
T  49528163 ttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtg 49528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 46487477 - 46487522
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 211  Q
    ||||||||| ||||  ||||||||| ||||||||||||||||||||    
T  46487477 tgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcg 46487522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 892 - 814
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| ||  || ||||||  ||||||||||||||||||||||    
T  892 tgagtagtgacgatgagtggttatggatatcgttttccagtgatc-attccgtgaaagagtctgttttaggtggtgatgt 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatattt-cgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgag 135  Q
    |||||| |||| ||||||||| ||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||| | | |||||||| ||||||  |||    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  136 aatttcatttaga-gcggtcttctttcggggtgagtagtgacgatg 180  Q
    | |||||||| || |||   |||||| || ||||||||||||||||    
T  39021167 agtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 823450 - 823246
Alignment:
Q  11 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 110  Q
    ||||| || ||||| ||||||| |||||||||||||  | | ||||||||||||||| |  ||| ||||||| |||  |||| ||  ||||| |||||||    
T  823450 agttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttttcaataggacattttcagatgtgg 823351  T
Q  111 ttcaactttggtgatgaggatcgagaatttcatttagagcggtctt-ctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggt 209  Q
     |||| | |||| || ||||    |  ||| | |||||| ||| || ||||  |||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  823350 ctcaattatggtaataaggacatggtgtttgaattagagaggtgtttcttttagggtgagtagaggcgaagggtggttatggatatcgtttttcagtggt 823251  T
Q  210 cgttt 214  Q
     ||||    
T  823250 tgttt 823246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 14879648 - 14879708
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgttt 214  Q
    |||||||||||||| ||||||||||| |||||  || |||||| |||||||||||||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 32010016 - 32010063
Alignment:
Q  198 tttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    |||||||| |||||||| ||||||  ||||||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtgatgt 32010063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 25647777 - 25647863
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    |||||| |||| ||||||||| |||||||||||| ||  ||||||| |||||  |||||| |||||||| |||| |||  |||||||    
T  25647777 ttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 37123601 - 37123683
Alignment:
Q  164 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||||||| |  ||||||  || ||||||||||| |||||||||||| |||||| |||||| |||||  |||||||||    
T  37123601 ggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtgatgt 37123683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 14194152 - 14194229
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||||||||||||||||| ||||  || |||||||| |||||||| || || |||||   |||||||||||||||||||    
T  14194152 ggggtgagtagtgacgatggatggt--tggatatcgttattcagtgg-cgatttcgtgatggagtctgttttaggtggtga 14194229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 23328233 - 23328188
Alignment:
Q  142 atttagagcggtcttctttcggggtgagtagtgacgatgggtggtt 187  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggtt 23328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 25594406 - 25594328
Alignment:
Q  166 tgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 245  Q
    ||||||||| |||||||||||| || |||||| |||||||||||||||||  |||||  ||| |||||||||| |||||||    
T  25594406 tgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtcgttt-tgtgaaggagtatgttttaggtagtgatgt 25594328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 27399140 - 27399246
Alignment:
Q  138 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtgg-ttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 236  Q
    |||||||||||  ||| |||||| ||| ||||||||| | |||||||| ||||  |||||| ||||||||||||| || ||||||  || ||||||||||    
T  27399140 tttcatttagacgggtgttcttttgggctgagtagtggcaatgggtggtttatagatatcg-ttttcagtggtcg-ttgcgtgaaggagcctgttttagg 27399237  T
Q  237 tggtgatgt 245  Q
    || ||||||    
T  27399238 tgatgatgt 27399246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 239
Target Start/End: Complemental strand, 28937574 - 28937498
Alignment:
Q  164 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 239  Q
    ||||||||||| |||||||||||  || ||||||||||| ||||||||  || ||||||   |||||||||||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg 28937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 33143813 - 33143733
Alignment:
Q  163 gggtgagtagtgacgatgggtggttatgtatatcgttt-ttcagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||||||||||||| || |||   || ||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 245
Target Start/End: Complemental strand, 17720626 - 17720503
Alignment:
Q  121 gtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtga 220  Q
    ||||||||||  |||  |||||||||||| ||| |  ||| ||||||||||||||||||  ||||||||||||||| ||||| || |||| |||  ||||    
T  17720626 gtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttttagaggtc-ttttggtga 17720528  T
Q  221 ataagtctgttttaggtggtgatgt 245  Q
    |  ||| |||||||||| |||||||    
T  17720527 aggagtttgttttaggtagtgatgt 17720503  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 10248430 - 10248349
Alignment:
Q  162 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    ||||||||||||||||||||||| |   | || |||||||| |||||||||||| ||||||  ||| |||||||||||||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtga 10248349  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 17656992 - 17656906
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 123  Q
    ||||||||||| ||||||||| || ||||||||  ||| ||||||| ||||  ||| ||| ||||| || |||| ||||||||||||    
T  17656992 ttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtg 17656906  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 12197945 - 12197857
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12197857  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 12442373 - 12442285
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| ||||||||||    
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtga 12442285  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 15906839 - 15906978
Alignment:
Q  112 tcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 211  Q
    ||||||| |||||||||||  | |  ||| |||||||| ||| || ||| ||| ||||||||| | |   ||||||||| |||  |||||||||||||||    
T  15906839 tcaacttaggtgatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggcaacatgtggttatggatactgtttttcagtggtcg 15906938  T
Q  212 tttacgtgaataagtctgttttaggtggtgatgtccatctc 252  Q
    ||| ||||||    |||||||| |||||||||||| |||||    
T  15906939 ttt-cgtgaagggatctgtttttggtggtgatgtctatctc 15906978  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 58218 - 58430
Alignment:
Q  37 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 136  Q
    ||||||||||| ||||||||| ||||| || ||  ||| |||| || ||||| ||| ||| |||||| |||||| ||| |||||||| |  |||  ||||    
T  58218 ttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgaga 58317  T
Q  137 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtctgttt 232  Q
     ||| |||| |||  || ||   |||| || |||||||||||||| |||| ||  || ||||| ||||| || ||||||||| ||||||  |||||||||    
T  58318 gtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgttt 58417  T
Q  233 taggtggtgatgt 245  Q
    | |||||||||||    
T  58418 ttggtggtgatgt 58430  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 36920 - 37005
Alignment:
Q  155 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 242  Q
    |||||| |||||||||||||||| ||| ||||  || || |||||||| ||||||| |||| ||||||  |||||||||||||||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggt--tggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtga 37005  T

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