View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_14 (Length: 260)
Name: NF6936_low_14
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 23640303 - 23640076
Alignment:
| Q |
19 |
cacctctcactacaaacttcctccaagccaccaccttcctctccccctcctagtccaaataaactttatgtacacatggatctggtggcgtgttccccgt |
118 |
Q |
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| T |
23640303 |
cacctctcactacaaacttcctccaagccaccaccttcctctccccctcctagtccaaataaactttatgtacacatggatctggtggcgtgttccccgt |
23640204 |
T |
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| Q |
119 |
tccaacaactgcaccaccctctttcacattggttccatttacatatcggaagcttgctaggtcagcgctataatttataaacttttgaacatatatgcag |
218 |
Q |
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| T |
23640203 |
tccaacaactgcaccaccctctttcacattggtaccatttgcatatcggaagcttgctaggtcagcgctataatttataaacttttgaacatatatgcag |
23640104 |
T |
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| Q |
219 |
gtggaattttatggcttagatggatttg |
246 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
23640103 |
gtggaattttatggcttagatggatttg |
23640076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27185218 - 27185265
Alignment:
| Q |
22 |
ctctcactacaaacttcctccaagccaccaccttcctctccccctcct |
69 |
Q |
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| T |
27185218 |
ctctctctacaaacttccaccaagccaccaccttcctcttcccttcct |
27185265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 27834760 - 27834807
Alignment:
| Q |
22 |
ctctcactacaaacttcctccaagccaccaccttcctctccccctcct |
69 |
Q |
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||||| |||||||||||| |||||||||||||||||||| ||| |||| |
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| T |
27834760 |
ctctctctacaaacttccaccaagccaccaccttcctcttcccttcct |
27834807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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