View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_low_17 (Length: 246)

Name: NF6936_low_17
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_low_17
NF6936_low_17
[»] chr1 (12 HSPs)
chr1 (19-232)||(10977116-10977355)
chr1 (125-242)||(10931697-10931831)
chr1 (25-87)||(10908534-10908596)
chr1 (125-183)||(11030738-11030796)
chr1 (20-88)||(10931878-10931946)
chr1 (20-75)||(11030624-11030679)
chr1 (175-228)||(11030805-11030859)
chr1 (181-231)||(11006300-11006350)
chr1 (20-86)||(11006140-11006209)
chr1 (137-187)||(10908416-10908466)
chr1 (143-177)||(11043472-11043506)
chr1 (185-227)||(11043408-11043450)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 10977355 - 10977116
Alignment:
Q  19 aatcatgatatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaannnnnnnnnnnnnnnatatcaaagttctac 118  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||| |     
T  10977355 aatcatgatatcatgtagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaattattttattttcttatatcaaagttcaat 10977256  T
Q  119 aaa--------tagatttctttggcaaatagattttacaaagaacacctccatctatttggcatctg------------------agaaaataaacaacg 192  Q
     ||        |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||    
T  10977255 taatgtattcctcaatttctttggcgaatagattttacaaagaacacctccatctatttggcatctgggaaaaataaaatacttcagaaaataaacaacg 10977156  T
Q  193 gcccctctaagggaaatgtttcctaacttgcatactaaga 232  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10977155 gcccctctaagggaaatgtttcctaacttgcatactaaga 10977116  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 10931831 - 10931697
Alignment:
Q  125 atttctttggcaaatagattttacaaagaacacctccatctatttggcatctg-----------------agaaaataaacaacggcccctctaagggaa 207  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  10931831 atttctttggcgaatagattttacaaagaacacatccatctatttggcatctgggaaaaataaaatactgagaaaataaacaacggcccctctaagggaa 10931732  T
Q  208 atgtttcctaacttgcatactaagaataatctagc 242  Q
    |||||||||||||||||||||||||| ||| ||||    
T  10931731 atgtttcctaacttgcatactaagaagaatatagc 10931697  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 10908596 - 10908534
Alignment:
Q  25 gatatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgta 87  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10908596 gatataatggagaaaagcgattctcaattttttggcagttttgtttataatgcaaatattgta 10908534  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 11030738 - 11030796
Alignment:
Q  125 atttctttggcaaatagattttacaaagaacacctccatctatttggcatctgagaaaa 183  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11030738 atttctttggcgaatagattttacaaagaacacctccatctatttggcatctgggaaaa 11030796  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 10931946 - 10931878
Alignment:
Q  20 atcatgatatcatagagaaaagcgattctcaattctttggcagttttgtttataatgcaaatattgtaa 88  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||  |||||||||||    
T  10931946 atcatgatatcatggagaaaagcgattctgaagtctttggcagttttgtttataataaaaatattgtaa 10931878  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 11030624 - 11030679
Alignment:
Q  20 atcatgatatcatagagaaaagcgattctcaattctttggcagttttgtttataat 75  Q
    ||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  11030624 atcatgatatcatggagaaaagcgattctgaagtctttggcagttttgtttataat 11030679  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 11030805 - 11030859
Alignment:
Q  175 ctgagaaaataaacaacggcccctctaa-gggaaatgtttcctaacttgcatact 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  11030805 ctgagaaaataaacaacggcccctctaaggggaaatgtttcctaacttgaatact 11030859  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 11006300 - 11006350
Alignment:
Q  181 aaataaacaacggcccctctaagggaaatgtttcctaacttgcatactaag 231  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  11006300 aaataaataatggcccctccaagggaaatgtttcctaacttgcatactaag 11006350  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 11006140 - 11006209
Alignment:
Q  20 atcatgatatcatagagaaaagcgattctcaattc---tttggcagttttgtttataatgcaaatattgt 86  Q
    ||||||||||||| ||||||| || |||| |||||   ||||||||||||||||| ||||||||||||||    
T  11006140 atcatgatatcatggagaaaaacgtttctgaattcggttttggcagttttgtttacaatgcaaatattgt 11006209  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 10908466 - 10908416
Alignment:
Q  137 aatagattttacaaagaacacctccatctatttggcatctgagaaaataaa 187  Q
    |||||||||||||| ||||| ||||||||||||||||||||  ||||||||    
T  10908466 aatagattttacaaggaacaactccatctatttggcatctggaaaaataaa 10908416  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 11043506 - 11043472
Alignment:
Q  143 ttttacaaagaacacctccatctatttggcatctg 177  Q
    |||||||||||||||||||||||||||||||||||    
T  11043506 ttttacaaagaacacctccatctatttggcatctg 11043472  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 11043450 - 11043408
Alignment:
Q  185 aaacaacggcccctctaagggaaatgtttcctaacttgcatac 227  Q
    |||||| ||||||||||||||||||||||||||| || |||||    
T  11043450 aaacaatggcccctctaagggaaatgtttcctaatttacatac 11043408  T

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