View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_low_19 (Length: 231)

Name: NF6936_low_19
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_low_19
NF6936_low_19
[»] chr7 (3 HSPs)
chr7 (5-231)||(1248857-1249083)
chr7 (14-228)||(12079546-12079760)
chr7 (14-228)||(12096186-12096400)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 1248857 - 1249083
Alignment:
Q  5 acaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1248857 acaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctaccatacctggagaccctca 1248956  T
Q  105 tattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1248957 tattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccgg 1249056  T
Q  205 tcctatccccgattactttagcaagct 231  Q
    ||||||||| |||||||||||||||||    
T  1249057 tcctatccctgattactttagcaagct 1249083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12079760 - 12079546
Alignment:
Q  14 cgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgca 113  Q
    |||||||||||||| ||||| || ||||||||||| || |||||||| ||||| |||||||| || || ||||| ||||| ||||||||||| || |||     
T  12079760 cgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctaccttacctcgagaccctcattttacgcc 12079661  T
Q  114 acctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccc 213  Q
     ||| |||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||    
T  12079660 tcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccc 12079561  T
Q  214 cgattactttagcaa 228  Q
     ||||||||||||||    
T  12079560 tgattactttagcaa 12079546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12096400 - 12096186
Alignment:
Q  14 cgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacctggagaccctcatattccgca 113  Q
    |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || ||||| ||||| ||||||||||| || |||     
T  12096400 cgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctaccttacctcgagaccctcatttttcgcc 12096301  T
Q  114 acctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccc 213  Q
     |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| |||||||||||    
T  12096300 tcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccc 12096201  T
Q  214 cgattactttagcaa 228  Q
     ||||||||||||||    
T  12096200 tgattactttagcaa 12096186  T

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