View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_21 (Length: 228)
Name: NF6936_low_21
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_21 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 5941 - 5720
Alignment:
| Q |
7 |
gtttccttgaaagcttgaacataaaatgatcgaattctgaagaattaatgtatccaaaccacatagttaacatttttgtccataactataattaagactg |
106 |
Q |
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| T |
5941 |
gtttccttgaaagcttgaacataaaatgatcgaattctgaagaattaatgtatccaaaccacatagttaacatttttgtccataactataattaagactg |
5842 |
T |
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| Q |
107 |
aatcaactgaattagtgaacgtactcaacttgatttcatacaacatattaattattattaaatccattactctgatcagttcaatattcattttttgtat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5841 |
aatcaactgaattagtgaacgtactcaacttgatttcatacaacatattaattattattaaatccattactctgatcagttcaatattcattttttgtat |
5742 |
T |
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| Q |
207 |
catgaagctgcatatccttata |
228 |
Q |
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|||||||||||||||||||||| |
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| T |
5741 |
catgaagctgcatatccttata |
5720 |
T |
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