View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6936_low_23 (Length: 222)
Name: NF6936_low_23
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 7978432 - 7978611
Alignment:
| Q |
30 |
tcatcctgatttgtgtcgtgatcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagnnnnnnncaagcttcc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7978432 |
tcatcctgatttgtgtcgtgatcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcc |
7978531 |
T |
|
| Q |
130 |
tttcactgtgattattttgttgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7978532 |
tttcactgtgattattttgttgtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
7978611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 1530280 - 1530131
Alignment:
| Q |
50 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagnnnnnnncaagcttcctttcactgtgattattttgt |
149 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | | |||||||||||||| ||||||| |||||||| | |||||||||||| |
|
|
| T |
1530280 |
atcatggggtagtagaatgagggccaaaaacaata---taaccaaagatgatcatactaactagt-----------ttcctttccatatgattattttgt |
1530195 |
T |
|
| Q |
150 |
t---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattcttc |
210 |
Q |
| |
|
| ||| |||||||||| ||||||| |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
1530194 |
taatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattcttc |
1530131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 1516050 - 1515902
Alignment:
| Q |
50 |
atcatggggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagnnnnnnncaagcttcctttcactgtgattattttgt |
149 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | | |||||||||||||| ||||||| |||||||| | |||||||||||| |
|
|
| T |
1516050 |
atcatggggtagtagaatgagggccaaaaacaata---taaccaaagatgatcatactaactagt-----------ttcctttccatatgattattttgt |
1515965 |
T |
|
| Q |
150 |
t---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
209 |
Q |
| |
|
| ||| |||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1515964 |
taatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctt |
1515902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University