View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_4 (Length: 494)
Name: NF6936_low_4
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 41105406 - 41104925
Alignment:
| Q |
1 |
gatgaagagagtgaaacagaaacaactgttcctgaagggttttttgcggttattgcaatgcaaggtgaagaaacaaagagatttgttcttgagttggatt |
100 |
Q |
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| T |
41105406 |
gatgaagagagtgaaacagaaacaactgttcctgaagggttttttgcggttattgcaatgcaaggtgaagaaacaaagagatttgttcttgagttggatt |
41105307 |
T |
|
| Q |
101 |
acttaacaaatcctcatttcatgaaactattggagcaagctaaggatgagtatggttatcaacaaaagggtgctattgcattgccatgtaagcctcaaga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105306 |
acttaagaaatcctcatttcatgaaactattggagcaagctaaggatgagtatggttatcaacaaaagggtgctattgcattgccatgtaagcctcaaga |
41105207 |
T |
|
| Q |
201 |
acttcaaaagattatagagaatcgacatagtgatgctttataacacttcttctggattcaataatctataattagacacatttatgtatacagatagtgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
41105206 |
acttcaaaagattatagagaatcgacatagtgatgctttataacacttcttctggattcaacaatctatatttagacacatttatgtatacagatagtgc |
41105107 |
T |
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| Q |
301 |
aaaaactatcaatattctttttagtatataaacatcaatttgatttttacataggtaggcaattcaaacaagatagttctacc----tattttgaatttg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |
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| T |
41105106 |
aaaaactatcaatattctttttagtatataaacatcaatttgatttttacataggtagacatttcaaacaagatagttctacctatatattttgaatttg |
41105007 |
T |
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| Q |
397 |
tatactttcgtctcaaacatgtataatgtattgtttgtgacttttgtaacgacttaaattcttccacaaatatgatagaatt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105006 |
tatactttcgtctcaaacatgtataatgtattgtttgtgacttttgtaacgacttaaattcttccacaaatatgatagaatt |
41104925 |
T |
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