View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6936_low_5 (Length: 448)

Name: NF6936_low_5
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6936_low_5
NF6936_low_5
[»] chr3 (8 HSPs)
chr3 (19-441)||(31825608-31826030)
chr3 (20-295)||(24981901-24982176)
chr3 (26-280)||(24923518-24923772)
chr3 (29-382)||(25084799-25085159)
chr3 (29-280)||(24497320-24497571)
chr3 (26-274)||(24919944-24920192)
chr3 (29-364)||(21584658-21584989)
chr3 (393-435)||(24923889-24923931)
[»] chr7 (4 HSPs)
chr7 (32-273)||(10575264-10575505)
chr7 (20-273)||(39954897-39955150)
chr7 (29-238)||(354316-354526)
chr7 (42-177)||(10580760-10580895)
[»] chr8 (1 HSPs)
chr8 (23-276)||(14261087-14261340)
[»] chr4 (3 HSPs)
chr4 (40-252)||(53328612-53328824)
chr4 (23-198)||(22898505-22898680)
chr4 (23-198)||(22950173-22950348)
[»] chr2 (1 HSPs)
chr2 (23-177)||(41027545-41027699)
[»] chr5 (1 HSPs)
chr5 (40-132)||(26358620-26358712)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 31825608 - 31826030
Alignment:
Q  19 cgcggtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatag 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31825608 cgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatag 31825707  T
Q  119 atcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825708 atcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcc 31825807  T
Q  219 tttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgagaaacgaagaagatttgagaaatttgg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31825808 tttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattggagaaacgaagaagatttgagaaatttgg 31825907  T
Q  319 gaaattagggtttggttttgacttggagtgggaaagagagaaggggatctgagtatttatgaattggtgggagcgtgagagcgggatgaataagagggaa 418  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31825908 gaaattagggtttggttttgaatcggagtgggaaagagagaaggggatctgagtatttatgaatgggtgggagcgtgagagcgggatgaataagagggaa 31826007  T
Q  419 ctgaattttgtgttttcatctca 441  Q
    |||||||||||||||| ||||||    
T  31826008 ctgaattttgtgttttgatctca 31826030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 295
Target Start/End: Complemental strand, 24982176 - 24981901
Alignment:
Q  20 gcggtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 119  Q
    |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24982176 gcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatata 24982077  T
Q  120 tcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcct 219  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || |||||    
T  24982076 tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcct 24981977  T
Q  220 ttttgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgagaaa 295  Q
     |||||||||||||||||||| ||||||||||| || ||||| |||||||||||||| ||||||||||||||||||    
T  24981976 ctttgcacctccctttcctagtcccttacctccttttccacgccctgacattttcaaaagatgaaaattcgagaaa 24981901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 26 - 280
Target Start/End: Original strand, 24923518 - 24923772
Alignment:
Q  26 actgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaac 125  Q
    |||||||||||||| || |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24923518 actgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaac 24923617  T
Q  126 cactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgc 225  Q
    ||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || ||||| ||||| ||||| |||||    
T  24923618 cactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgc 24923717  T
Q  226 acctccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 280  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  24923718 acctccctttccgagtcccttacctcccttaccacgacctgacattttcaagaga 24923772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 29 - 382
Target Start/End: Complemental strand, 25085159 - 25084799
Alignment:
Q  29 gtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccac 128  Q
    ||||||||||| || |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25085159 gtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccac 25085060  T
Q  129 tgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacc 228  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||    
T  25085059 tgattctcttcacaccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacc 25084960  T
Q  229 tccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgag-aaacg--aagaagatttgagaaatttgggaaatta 325  Q
    ||||||||| |  |||||||||||||| ||||||||||||||||||  ||   ||||||| ||| |||||  ||||| ||| | |||||| | |||||||    
T  25084959 tccctttcccaatcccttacctccctttccacgacctgacattttcgcga---gaaaatttgagaaaacgaaaagaaaattagggaaattagagaaatta 25084863  T
Q  326 ggg-tttggttttgacttg------gagtgggaaagagagaaggggatctgagtatttatgaat 382  Q
    ||| ||||  ||||| |||      |||||||||||||||||  ||||||||||||||||||||    
T  25084862 gggttttgaatttgaattgaattgtgagtgggaaagagagaaacggatctgagtatttatgaat 25084799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 29 - 280
Target Start/End: Original strand, 24497320 - 24497571
Alignment:
Q  29 gtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccac 128  Q
    ||||||||||| || |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24497320 gtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccac 24497419  T
Q  129 tgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacc 228  Q
    |||| ||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| || ||||| || || ||||| ||||||||    
T  24497420 tgattctcttaacaccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacc 24497519  T
Q  229 tccctttcctagccccttacctcccttaccacgacctgacattttcaagaga 280  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||||||||||    
T  24497520 tccctttccgagtcccttacctccctttccacgccctgacattttcaagaga 24497571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 26 - 274
Target Start/End: Original strand, 24919944 - 24920192
Alignment:
Q  26 actgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaac 125  Q
    ||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24919944 actgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaac 24920043  T
Q  126 cactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgc 225  Q
    | ||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |||||    
T  24920044 cgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgc 24920143  T
Q  226 acctccctttcctagccccttacctcccttaccacgacctgacattttc 274  Q
    |||||||||||| |  |||||||||||||| ||||| || |||||||||    
T  24920144 acctccctttcccaatcccttacctccctttccacggccagacattttc 24920192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 29 - 364
Target Start/End: Original strand, 21584658 - 21584989
Alignment:
Q  29 gtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccac 128  Q
    ||||||||||| |||||||||||||| || ||||||||||| || |||||||||||||| ||||| |  || ||||| ||||| ||||| ||||||||||    
T  21584658 gtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccac 21584757  T
Q  129 tgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacc 228  Q
    |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||| || || |||||||| ||||| || ||||||||    
T  21584758 tgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacc 21584857  T
Q  229 tccctttcctagccccttacctcccttaccacgacctgacattttcaagagatgaaaattcgagaaacgaagaagatttgagaaatttgggaaattaggg 328  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||   ||||||| |||||||  |||| | ||| |||||||||| ||||||||    
T  21584858 tccctttcctagtcccttacctccctttccacgacctgacattttcaaga---gaaaatttgagaaacagagaa-aattgggaaatttggggaattaggg 21584953  T
Q  329 tttggttttgacttggagtgggaaagagagaagggg 364  Q
    ||| |  |||  || |||||||||| ||||||||||    
T  21584954 ttttgaattggatttgagtgggaaacagagaagggg 21584989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 24923889 - 24923931
Alignment:
Q  393 gtgagagcgggatgaataagagggaactgaattttgtgttttc 435  Q
    |||||||||||| ||| ||||||||||| ||||||||||||||    
T  24923889 gtgagagcgggaggaagaagagggaactcaattttgtgttttc 24923931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 32 - 273
Target Start/End: Complemental strand, 10575505 - 10575264
Alignment:
Q  32 ttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactga 131  Q
    |||||||| |||||||||||||| || || ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||    
T  10575505 ttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactga 10575406  T
Q  132 tcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctcc 231  Q
    | || |||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||||||||| |||||||| || |  || || |||||||| ||    
T  10575405 ttcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcaccccc 10575306  T
Q  232 ctttcctagccccttacctcccttaccacgacctgacatttt 273  Q
    ||||||||  || ||||||||||| |||||||| ||||||||    
T  10575305 ctttcctaatcctttacctccctttccacgaccagacatttt 10575264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 39954897 - 39955150
Alignment:
Q  20 gcggtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcataga 119  Q
    |||||||| || ||||||||||||||||||||||| || || |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| ||||    
T  39954897 gcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtaga 39954996  T
Q  120 tcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcct 219  Q
    | | ||| ||||| |||||||||||||| |  || || |  |||||||| |||||||| || || || |||||||||||||| ||||| |||||||||||    
T  39954997 tgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcct 39955096  T
Q  220 ttttgcacctccctttcctagccccttacctcccttaccacgacctgacatttt 273  Q
     ||||| ||||||||||| |  ||||| ||||| || |||||||||||||||||    
T  39955097 ctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 39955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 354526 - 354316
Alignment:
Q  29 gtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaa-cca 127  Q
    ||||||||||| |||||||||||||| || || |||||||  ||  |||||| |||||| |||||||| || |||||  |||| |||||||| ||| |||    
T  354526 gtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctcatagattaaaacca 354427  T
Q  128 ctgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcac 227  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||||| || || || || |||||  |||  ||||| || || || |  |||||||    
T  354426 ctgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcac 354327  T
Q  228 ctccctttcct 238  Q
    |||||||||||    
T  354326 ctccctttcct 354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 177
Target Start/End: Complemental strand, 10580895 - 10580760
Alignment:
Q  42 catgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttcac 141  Q
    ||||||||||||| || || |||||| | ||   ||||| |||||| |||||||| |  |||||  |||| |||||||||||||||||||||||||||||    
T  10580895 catgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcac 10580796  T
Q  142 accacctcttctcgccaatcgacgaatggcaggctt 177  Q
    |||| ||||||||||||||| |||||| || |||||    
T  10580795 accaactcttctcgccaatctacgaatcgctggctt 10580760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 14261087 - 14261340
Alignment:
Q  23 gtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatca 122  Q
    ||||| ||||||||||| ||||| ||||| || || || ||||| |  || |||||||||||||| |||||||| ||||| |  ||||||||||| ||||    
T  14261087 gtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatca 14261186  T
Q  123 aaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttt 222  Q
    | || ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||||||||| || || ||||| |  || || ||    
T  14261187 acccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctt 14261286  T
Q  223 tgcacctccctttcctagccccttacctcccttaccacgacctgacattttcaa 276  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  14261287 tgcacctccctttcctaatcccttacctccctttccacgacctgacattttcaa 14261340  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 53328824 - 53328612
Alignment:
Q  40 agcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgatcctcttc 139  Q
    ||||||||| ||||||||||| |||||||| || |||||||| |  |||||||| |  || || |  |||||||||||||| || |||||||| | ||||    
T  53328824 agcatgctctgtgtatgtgacagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttc 53328725  T
Q  140 acaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttccta 239  Q
    |||||||| | ||| || |  |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || | ||| | ||| || || ||||||||||    
T  53328724 acaccaccacgtcttgcgagacgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttccta 53328625  T
Q  240 gccccttacctcc 252  Q
      ||||| |||||    
T  53328624 aaccctttcctcc 53328612  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 22898680 - 22898505
Alignment:
Q  23 gtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatca 122  Q
    ||||| |||||||| ||||| ||||||||||| || || ||||| |  || ||||||||||| || |||||||| || || |  || || ||||| ||||    
T  22898680 gtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatca 22898581  T
Q  123 aaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtc 198  Q
    |||||||||| | |||||| || ||||| |  || |  |||||||| || ||||| || || ||||||||||||||    
T  22898580 aaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtc 22898505  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 22950348 - 22950173
Alignment:
Q  23 gtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatca 122  Q
    ||||| |||||||| ||||| ||||||||||| || || ||||| |  || ||||||||||| || |||||||| || || |  || || ||||| ||||    
T  22950348 gtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatca 22950249  T
Q  123 aaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtc 198  Q
    |||||||||| | |||||| || ||||| |  || |  |||||||| || ||||| || || ||||||||||||||    
T  22950248 aaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattccctggatgttgtc 22950173  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 41027699 - 41027545
Alignment:
Q  23 gtaactgtcttcctcctagcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatca 122  Q
    ||||| ||||| |||||||| ||||| ||||| || || |||||||| || ||||||||||| ||||||||||| || || |  || ||||| |||||||    
T  41027699 gtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatca 41027600  T
Q  123 aaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 177  Q
    |||| || || | |||||| || ||||| |  ||||| |||||||| ||||||||    
T  41027599 aaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggctt 41027545  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 26358620 - 26358712
Alignment:
Q  40 agcatgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat 132  Q
    |||||| |||||||| ||||| |||||||| || |||||||| |  || ||||| |  ||||| |  |||||||||||||||| |||||||||    
T  26358620 agcatgttcagtgtaagtgacagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

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