View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_7 (Length: 385)
Name: NF6936_low_7
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 21 - 372
Target Start/End: Complemental strand, 12920194 - 12919843
Alignment:
| Q |
21 |
gagaagcctcttgttctagatgattaattggagatggccaaaaggtgaaggtctggaaagacaattggttgtctgagcaagtaaagttcaaggtgtggag |
120 |
Q |
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| T |
12920194 |
gagaagcctcttgttctagatgtttaattggagatggcgaaaaggtgaaggtctggaaagacaattggttgcctgagcaaggaaagttcaaggtgtggag |
12920095 |
T |
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| Q |
121 |
tcctgtaaaaaacctgccgcaagatgcaccggtgagtgagcttatagacagggaaacaaaaacctggagtaggaccaaagttttcaacaccttcaactcg |
220 |
Q |
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| T |
12920094 |
tcctgtaaaaaacctgccccatgatacaccggtgagtgagcttatagacagggaaacaaaaacctggagtaggaccaaagttttcaacaccttcaactcg |
12919995 |
T |
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| Q |
221 |
tatgaagcccatcaaattattaacattccaatctcgtggaggctaccagaggataaaaggattttgcattgggaaagaaatggtaattactctgtgcgtt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12919994 |
tatgaagcccatcaaattattaacattccaatctcgtggagactactagaggataaaaggattttgcattgggaaagaaatggtaattactctgtgcgtt |
12919895 |
T |
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| Q |
321 |
cggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12919894 |
cggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttc |
12919843 |
T |
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