View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6936_low_8 (Length: 384)
Name: NF6936_low_8
Description: NF6936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6936_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 370
Target Start/End: Original strand, 27268026 - 27268376
Alignment:
| Q |
20 |
caacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268026 |
caacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggtt |
27268125 |
T |
|
| Q |
120 |
ttcttctaccttgctgagaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268126 |
ttcttctaccttgctgagaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctg |
27268225 |
T |
|
| Q |
220 |
caacagttgctgactataccctcaagctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaatacaattttcttt |
319 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27268226 |
caacagttgctgactatatcctcaagctccttcacaggagaatccccccagccgtccctggtatcatggtatgtgaaactaaccaaatacaattttcttt |
27268325 |
T |
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| Q |
320 |
gtattccaaacttttatctttgttcatacaatatgaagcaacgacacaggt |
370 |
Q |
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| T |
27268326 |
gtattccaaacttttatctttgttcatacaatatgaagcaacgacacaggt |
27268376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 21195491 - 21195781
Alignment:
| Q |
20 |
caacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggtt |
119 |
Q |
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| T |
21195491 |
caacggattggtcccaattgtggaaccagagatcttgctggatggagaacatggtattgacagaacttatgaagtagcacaaaaggtttgggctgaggtt |
21195590 |
T |
|
| Q |
120 |
ttcttctaccttgctgagaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
21195591 |
ttcttctaccttgctgagaacaatgtccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctg |
21195690 |
T |
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| Q |
220 |
caacagttgctgactataccctcaagctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
310 |
Q |
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| T |
21195691 |
caacagttgctgactataccctcaagctccttcacaggagaattccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
21195781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 27251240 - 27251530
Alignment:
| Q |
20 |
caacggattggtcccaattgtggaaccagagatcttgcttgatggagaacatagtattgacagaacttttgaagtagcacaaaaggtttgggctgaggtt |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
27251240 |
caacggattggtcccaattgtggaaccagagatcttgctggatggagaacatggtattgatagaacttatgaagtagcacaaaaggtttgggctgaggtt |
27251339 |
T |
|
| Q |
120 |
ttcttctaccttgctgagaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggtctcttctg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
27251340 |
ttcttctaccttgctgagaacaatgtccaatttgagggtattctcctcaagcctagcatggttaccccaggagctgagtccaaggacaaggcctctcctg |
27251439 |
T |
|
| Q |
220 |
caacagttgctgactataccctcaagctccttcacaggagaatccccccagccgtccctgatatcatggtatgtgaaactaaccaaataca |
310 |
Q |
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| T |
27251440 |
caacagttgctgactataccctcaagctccttcacaggagaattccccctgctgtccctggtatcatggtatgtgacactaaccaaataca |
27251530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 49364732 - 49364671
Alignment:
| Q |
136 |
agaacaatgtccaatttgagggcattctcctcaagcctagcatggttaccccaggagctgag |
197 |
Q |
| |
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|||||||||||| |||||||| ||| | |||||||||||||||||||| || || |||||| |
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| T |
49364732 |
agaacaatgtcctttttgagggaattttgctcaagcctagcatggttacacctggtgctgag |
49364671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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